Pfam 22.0 :: ydhR
Description of the ydhR family
wnt <-- --> z-alpha

ydhR


Accession number: PF08803
Putative mono-oxygenase ydhR

ydhR is a homodimeric protein that comprises of a central four-stranded beta sheet and four surrounding alpha helices [1]. It shows structural homology to the ActVA-Orf6 and YgiN proteins which indicates it could be a mono-oxygenase.

Description


Description text from InterPro entry IPR014910

Sequence information


Alignment

Seed (11)  Full (41)
Format:

Visualize domain structures

Seed (11)  Full (41)
display per page.

Species distribution

Tree depth:

Literature References

[1]
Solution structure of the Escherichia coli protein ydhR: a putative mono-oxygenase.
Revington M, Semesi A, Yee A, Shaw GS;
Protein Sci. 2005;14:3115-3120.

Database References

INTERPRO IPR014910

HMMER build information

Pfam_ls [download HMM] Pfam_fs [download HMM]
Gathering cutoff -17.30 -17.30 11.10 11.10
Trusted cutoff 4.70 4.70 13.60 13.60
Noise cutoff -40.90 -40.90 10.40 10.40
Build method of HMM hmmbuild -F HMM_ls SEED
hmmcalibrate --seed 0 HMM_ls
 hmmbuild -f -F HMM_fs SEED
hmmcalibrate --seed 0 HMM_fs

Pfam specific information

Author of entryMistry J
Type definitionFamily
Source of seed memberspdb_2asy