Pfam 22.0 :: WCOR413
Description of the WCOR413 family
WCCH <-- --> WD40

WCOR413


Accession number: PF05562
Cold acclimation protein WCOR413

This family consists of several WCOR413-like plant cold acclimation proteins.

Description

This family consists of several WCOR413-like plant cold acclimation proteins.
Description text from InterPro entry IPR008892

Sequence information


Alignment

Seed (11)  Full (27)
Format:

Visualize domain structures

Seed (11)  Full (27)
display per page.

Species distribution

Tree depth:

Literature References

[1]
Molecular characterization of XVSAP1, a stress-responsive gene from the resurrection plant Xerophyta viscosa Baker(1).
Garwe D, Thomson JA, Mundree SG;
J Exp Bot 2003;54:191-201.
[2]
Expression profiling and bioinformatic analyses of a novel stress-regulated multispanning transmembrane protein family from cereals and Arabidopsis.
Breton G, Danyluk J, Charron JB, Sarhan F;
Plant Physiol 2003;132:64-74.

Database References

INTERPRO IPR008892

HMMER build information

Pfam_ls [download HMM] Pfam_fs [download HMM]
Gathering cutoff 25.00 25.00 25.00 25.00
Trusted cutoff 34.70 34.70 95.40 60.80
Noise cutoff -75.60 -75.60 13.10 13.10
Build method of HMM hmmbuild -F HMM_ls SEED
hmmcalibrate --seed 0 HMM_ls
 hmmbuild -f -F HMM_fs SEED
hmmcalibrate --seed 0 HMM_fs

Pfam specific information

Author of entryMoxon SJ
Type definitionFamily
Source of seed membersPfam-B_7803 (release 8.0)