Pfam 22.0 :: UAF_Rrn10
Description of the UAF_Rrn10 family
UAA <-- --> UBA

UAF_Rrn10


Accession number: PF05234
UAF complex subunit Rrn10

The protein Rrn10 has been identified as a component of the Upstream Activating Factor (UAF), an RNA polymerase I (pol I) specific transcription stimulatory factor [1]

Description

The protein Rrn10 has been identified as a component of the Upstream Activating Factor (UAF), an RNA polymerase I (pol I) specific transcription stimulatory factor that recognizes the upstream ribosomal RNA (rRNA) gene promoter in a sequence specific manner and which stimulates rRNA synthesis PUBMED:12490702.


Description text from InterPro entry IPR007898

Sequence information


Alignment

Seed (2)  Full (7)
Format:

Visualize domain structures

Seed (2)  Full (7)
display per page.

Species distribution

Tree depth:

Literature References

[1]
Characterization of the fission yeast ribosomal DNA binding factor: components share homology with Upstream Activating Factor and with SWI/SNF subunits.
Liu M, Guo A, Boukhgalter B, Van Den Heuvel K, Tripp M, Pape L;
Nucleic Acids Res 2002;30:5347-5359.

Database References

INTERPRO IPR007898

HMMER build information

Pfam_ls [download HMM] Pfam_fs [download HMM]
Gathering cutoff 25.00 25.00 25.00 25.00
Trusted cutoff 83.10 83.10 25.20 25.20
Noise cutoff 19.30 19.30 12.50 12.50
Build method of HMM hmmbuild -F HMM_ls SEED
hmmcalibrate --seed 0 HMM_ls
 hmmbuild -f -F HMM_fs SEED
hmmcalibrate --seed 0 HMM_fs

Pfam specific information

Author of entryWood V, Bateman A
Type definitionFamily
Source of seed membersWood V