Pfam 22.0 :: SAA
Description of the SAA family
S6PP_C <-- --> SAB

SAA


Accession number: PF00277
Serum amyloid A protein

Description

The serum amyloid A (SAA) proteins comprise a family of vertebrate proteins that associate predominantly with high density lipoproteins (HDL) PUBMED:7504491, PUBMED:8188253. The synthesis of certain members of the family is greatly increased (as much as a 1000 fold) in inflammation; thus making SAA a major acute phase reactant. While the major physiological function of SAA is unclear, prolonged elevation of plasma SAA levels, as in chronic inflammation, however, results in a pathological condition, called amyloidosis, which affects the liver, kidney and spleen and which is characterized by the highly insoluble accumulation of SAA in these tissues. SAA are proteins of about 110 amino acid residues. The most highly conserved region is located in the central part of the sequence.
Description text from InterPro entry IPR000096

Sequence information


Alignment

Seed (9)  Full (88)
Format:

Visualize domain structures

Seed (9)  Full (88)
display per page.

Species distribution

Tree depth:

Database References

PRINTS PR00306
PROSITE PDOC00762
INTERPRO IPR000096

HMMER build information

Pfam_ls [download HMM] Pfam_fs [download HMM]
Gathering cutoff 25.00 25.00 20.00 20.00
Trusted cutoff 45.00 45.00 20.30 20.30
Noise cutoff -42.50 -42.50 10.90 10.90
Build method of HMM hmmbuild -F HMM_ls SEED
hmmcalibrate --seed 0 HMM_ls
hmmbuild -f -F HMM_fs SEED
hmmcalibrate --seed 0 HMM_fs

Pfam specific information

Author of entryFinn RD
Type definitionFamily
Source of seed membersProsite