Pfam 22.0 :: Rad1
Description of the Rad1 family
Rac1 <-- --> Rad10

Rad1


Accession number: PF02144
Repair protein Rad1/Rec1/Rad17

Description

REC1 of Ustilago maydis plays a key role in regulating the genetic system of the fungus. REC1 mutants are very sensitive to UV light. Mutation leads to a complex phenotype with alterations in DNA repair, recombination, mutagenesis, meiosis and cell division PUBMED:8276878. The predicted product of the REC1 gene is a polypeptide of 522 amino acid residues with molecular mass 57 kD. The protein shows 3'--5' exonuclease activity, but only in cells over-expressing REC1 PUBMED:8276878. While it is distinguishable from the major bacterial nucleases, the protein has certain enzymatic features in common with epsilon, the proof-reading exonuclease subunit of Escherichia coli DNA polymerase III holoenzyme PUBMED:8276878. The rad1 gene of Schizosaccharomyces pombe comprises three exons and encodes a 37 kD protein that exhibits partial similarity to the REC1 gene of U. maydis PUBMED:7926829. The two genes share putative functional similarities in their respective organisms.
Description text from InterPro entry IPR003021

Sequence information


Alignment

Seed (3)  Full (34)
Format:

Visualize domain structures

Seed (3)  Full (34)
display per page.

Species distribution

Tree depth:

Database References

PFAMB
The following Pfam-B family may contain sequences that according to Prodom are members of this Pfam-A family.
PB050380
PRINTS PR01245
INTERPRO IPR003021

HMMER build information

Pfam_ls [download HMM] Pfam_fs [download HMM]
Gathering cutoff -3.00 -3.00 25.00 25.00
Trusted cutoff -2.60 -2.60 28.80 28.80
Noise cutoff -4.10 -4.10 18.50 14.30
Build method of HMM hmmbuild -F HMM_ls SEED
hmmcalibrate --seed 0 HMM_ls
hmmbuild -f -F HMM_fs SEED
hmmcalibrate --seed 0 HMM_fs

Pfam specific information

Author of entryMian N, Bateman A
Type definitionFamily
Source of seed membersIPR003021