Pfam 22.0 :: NAD_binding_2
Description of the NAD_binding_2 family
NAD_binding_1 <-- --> NAD_binding_3

NAD_binding_2


Accession number: PF03446
NAD binding domain of 6-phosphogluconate dehydrogenase

The NAD binding domain of 6-phosphogluconate dehydrogenase adopts a Rossman fold.

Description

6-Phosphogluconate dehydrogenase () (6PGD) is an oxidative carboxylase that catalyses the decarboxylating reduction of 6-phosphogluconate into ribulose 5-phosphate in the presence of NADP. This reaction is a component of the hexose mono-phosphate shunt and pentose phosphate pathways (PPP) PUBMED:2113917, PUBMED:6641716. Prokaryotic and eukaryotic 6PGD are proteins of about 470 amino acids whose sequence are highly conserved PUBMED:1659648. The protein is a homodimer in which the monomers act independently PUBMED:6641716: each contains a large, mainly alpha-helical domain and a smaller beta-alpha-beta domain, containing a mixed parallel and anti-parallel 6-stranded beta sheet PUBMED:6641716. NADP is bound in a cleft in the small domain, the substrate binding in an adjacent pocket PUBMED:6641716.

This family represents the NAD binding domain of 6-phosphogluconate dehydrogenase which adopts a Rossman fold. The C-terminal domain is described in .


Description text from InterPro entry IPR006115

Sequence information


Alignment

Seed (178)  Full (2126)
Format:

Visualize domain structures

Seed (178)  Full (2126)
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Species distribution

Tree depth:

Database References

PFAMB
The following Pfam-B families contain sequences that according to Prodom are members of this Pfam-A family.
PB168752 PB169260 PB176482 PB180103
PROSITE PDOC00390
SCOP 2pgd (family)
INTERPRO IPR006115

HMMER build information

Pfam_ls [download HMM] Pfam_fs [download HMM]
Gathering cutoff -63.50 -63.50 15.00 15.00
Trusted cutoff -63.50 -63.50 15.00 15.00
Noise cutoff -63.60 -63.60 14.90 14.90
Build method of HMM hmmbuild -F HMM_ls SEED
hmmcalibrate --seed 0 HMM_ls
hmmbuild -f -F HMM_fs SEED
hmmcalibrate --seed 0 HMM_fs

Pfam specific information

Author of entryGriffiths-Jones SR
Type definitionDomain
Source of seed membersProsite