Pfam 22.0 :: AAA
Description of the AAA family
A4_EXTRA <-- --> AAA_2

AAA


Accession number: PF00004
ATPase family associated with various cellular activities (AAA)

AAA family proteins often perform chaperone-like functions that assist in the assembly, operation, or disassembly of protein complexes [2].

Description

A large family of ATPases has been described PUBMED:1860879, PUBMED:1825027, PUBMED:2140770, PUBMED:8507683, PUBMED:7646486 whose key feature is that they share a conserved region of about 220 amino acids that contains an ATP-binding site. This family is now called AAA, for 'A'TPases 'A'ssociated with diverse cellular 'A'ctivities. The proteins that belong to this family either contain one or two AAA domains.

It is proposed that, in general, the AAA domains in these proteins act as ATP-dependent protein clamps PUBMED:7646486.

In addition to the ATP-binding 'A' and 'B' motifs (see the relevant entry ), which are located in the N-terminal half of this domain, there is a highly conserved region located in the central part of the domain.


Description text from InterPro entry IPR003959

Sequence information


Alignment

Seed (229)  Full (9438)
Format:

Visualize domain structures

Seed (229)  Full (9438)
display per page.

Species distribution

Tree depth:

Literature References

[1]
A 200-amino acid ATPase module in search of a basic function.
Confalonieri F, Duguet M;
Bioessays 1995;17:639-650.
[2]
A large extension of the family
AAA+: A class of chaperone-like ATPases associated with the assembly, operation, and disassembly of protein complexes.
Neuwald AF, Aravind L, Spouge JL, Koonin EV;
Genome Res 1999;9:27-43.

Database References

HOMSTRAD AAA
PFAMB
The following Pfam-B families contain sequences that according to Prodom are members of this Pfam-A family.
PB001055 PB002445 PB002835 PB004034 PB004054 PB004529 PB006174 PB010074 PB011347 PB014493 PB017092 PB017844 PB019591 PB021149 PB023747 PB024173 PB025333 PB027022 PB033894 PB046045 PB053687 PB059234 PB073700 PB079034 PB089074 PB092331 PB093431 PB095598 PB106988 PB108902 PB117893 PB122392 PB166907 PB169258 PB169519 PB170160 PB170764 PB172420 PB172634 PB173668 PB173673 PB175994 PB176894 PB176902 PB177394 PB177865 PB179521 PB181500
PROSITE PDOC00572
SCOP 1nsf (family)
URL http://yeamob.pci.chemie.uni-tuebingen.de/Default.html
INTERPRO IPR003959

HMMER build information

Pfam_ls [download HMM] Pfam_fs [download HMM]
Gathering cutoff 12.30 12.30 20.70 24.10
Trusted cutoff 12.30 12.30 20.70 24.10
Noise cutoff 12.20 12.20 20.60 24.00
Build method of HMM hmmbuild -F HMM_ls SEED
hmmcalibrate --seed 0 HMM_ls
hmmbuild -f -F HMM_fs SEED
hmmcalibrate --seed 0 HMM_fs

Pfam specific information

Author of entrySonnhammer ELL
Type definitionFamily
Source of seed membersProsite