Pfam 22.0 :: YccV-like
Description of the YccV-like family
YcbB <-- --> YceI

YccV-like


Accession number: PF08755
Hemimethylated DNA-binding protein YccV like

YccV is a hemimethylated DNA binding protein which has been shown to regulate dnaA gene expression [1]. The structure of one of the hypothetical proteins in this family has been solved and it forms a beta sheet structure with a terminating alpha helix.

Description


Description text from InterPro entry IPR011722

Sequence information


Alignment

Seed (24)  Full (122)
Format:

Visualize domain structures

Seed (24)  Full (122)
display per page.

Species distribution

Tree depth:

Literature References

[1]
Isolation of a new hemimethylated DNA binding protein which regulates dnaA gene expression.
d'Alencon E, Taghbalout A, Bristow C, Kern R, Aflalo R, Kohiyama M;
J Bacteriol. 2003;185:2967-2971.

Database References

INTERPRO IPR011722

HMMER build information

Pfam_ls [download HMM] Pfam_fs [download HMM]
Gathering cutoff 6.40 6.40 17.00 17.00
Trusted cutoff 18.50 18.50 17.00 18.70
Noise cutoff 5.70 5.70 16.80 16.80
Build method of HMM hmmbuild -F HMM_ls SEED
hmmcalibrate --seed 0 HMM_ls
 hmmbuild -f -F HMM_fs SEED
hmmcalibrate --seed 0 HMM_fs

Pfam specific information

Author of entryMistry J
Type definitionDomain
Source of seed memberspdb_1bvb