Pfam 22.0 :: YaeQ
Description of the YaeQ family
YadA <-- --> YagB_YeeU_YfjZ

YaeQ


Accession number: PF07152
YaeQ protein

This family consists of several hypothetical bacterial proteins of around 180 residues in length which are often known as YaeQ. YaeQ is homologous to RfaH, a specialised transcription elongation protein. YaeQ is known to compensate for loss of RfaH function [1].

Description

This family consists of several hypothetical bacterial proteins of around 180 residues in length, which are often known as YaeQ. YaeQ is homologous to RfaH, a specialised transcription elongation protein. YaeQ is known to compensate for loss of RfaH function PUBMED:9604894.


Description text from InterPro entry IPR009822

Sequence information


Alignment

Seed (9)  Full (146)
Format:

Visualize domain structures

Seed (9)  Full (146)
display per page.

Species distribution

Tree depth:

Literature References

[1]
A gene, yaeQ, that suppresses reduced operon expression caused by mutations in the transcription elongation gene rfaH in Escherichia coli and Salmonella typhimurium.
Wong KR, Hughes C, Koronakis V;
Mol Gen Genet 1998;257:693-696.

Database References

INTERPRO IPR009822

HMMER build information

Pfam_ls [download HMM] Pfam_fs [download HMM]
Gathering cutoff 25.00 25.00 25.00 25.00
Trusted cutoff 76.80 76.80 54.60 54.60
Noise cutoff 2.40 2.40 10.20 10.20
Build method of HMM hmmbuild -F HMM_ls SEED
hmmcalibrate --seed 0 HMM_ls
 hmmbuild -f -F HMM_fs SEED
hmmcalibrate --seed 0 HMM_fs

Pfam specific information

Author of entryMoxon SJ
Type definitionFamily
Source of seed membersPfam-B_16245 (release 10.0)