Pfam 22.0 :: Macscav_rec
Description of the Macscav_rec family
Macro <-- --> Mad3_BUB1_I

Macscav_rec


Accession number: PF03523
Macrophage scavenger receptor

Description

The egg peptide speract receptor is a transmembrane glycoprotein of about 500 amino acids PUBMED:2538832. Topologically, it comprises a large extracellular domain of about 450 residues, followed by a transmembrane domain and a short cytoplasmic region of about 12 amino acids. The extracellular domain contains 4 repeats of a well-conserved region, which spans 115 amino acids and contains 6 conserved cysteines. A similar domain is also found towards the C-terminus of macrophage scavenger receptor type I PUBMED:1978939, a membrane glycoprotein implicated in the pathologic deposition of cholesterol in arterial walls during artherogenesis, and in the CD5 glycoprotein, which acts as a receptor in regulating T-cell proliferation.

The type I and type II human scavenger receptors are similar to their bovine, rabbit and murine counterparts. They consist of 6 domains: cytoplasmic (I); membrane-spanning (II); spacer (III); alpha-helical coiled- coil (IV); collagen-like (V); and a type-specific C-terminal (VI) PUBMED:2251254. Immunohistochemical studies have indicated the presence of scavenger receptors in the macrophages of lipid-rich atherosclerotic lesions, suggesting the involvement of these receptors in atherogenesis PUBMED:2251254.

The macrophage scavenger receptor is trimeric and has unusual ligand-binding properties PUBMED:2300204. The trimeric structure of the bovine type I scavenger receptor contains 3 extracellular C-terminal cysteine-rich domains connected to the transmembrane domain by a long fibrous stalk. The stalk structure, which consists of an alpha-helical coiled coil and a collagen-like triple helix, has not previously been observed in an integral membrane protein PUBMED:2300204.


Description text from InterPro entry IPR003543

Sequence information


Alignment

Seed (4)  Full (9)
Format:

Visualize domain structures

Seed (4)  Full (9)
display per page.

Species distribution

Tree depth:

Database References

INTERPRO IPR003543

HMMER build information

Pfam_ls [download HMM] Pfam_fs [download HMM]
Gathering cutoff 25.00 25.00 25.00 25.00
Trusted cutoff 112.60 112.60 110.60 110.60
Noise cutoff 4.70 4.70 11.30 11.30
Build method of HMM hmmbuild -F HMM_ls SEED
hmmcalibrate --seed 0 HMM_ls
hmmbuild -f -F HMM_fs SEED
hmmcalibrate --seed 0 HMM_fs

Pfam specific information

Author of entryGriffiths-Jones SR
Type definitionFamily
Source of seed membersPRINTS