Pfam 22.0 :: SAC3_GANP
Description of the SAC3_GANP family
SAB <-- --> SAE2

SAC3_GANP


Accession number: PF03399
SAC3/GANP/Nin1/mts3/eIF-3 p25 family

This large family includes diverse proteins involved in large complexes. The alignment contains one highly conserved negatively charged residue and one highly conserved positively charged residue that are probably important for the function of these proteins. The family includes the yeast nuclear export factor Sac3 P46674, and mammalian GANP/MCM3-associated proteins, which facilitate the nuclear localisation of MCM3, a protein that associates with chromatin in the G1 phase of the cell-cycle. The 26S protease (or 26S proteasome) is responsible for degrading ubiquitin conjugates. It consists of 19S regulatory complexes associated with the ends of 20S proteasomes. The 19S regulatory complex is composed of about 20 different polypeptides and confers ATP-dependence and substrate specificity to the 26S enzyme. The conserved region occurs at the C-terminal of the Nin1-like regulatory subunit [4,5,6]. This family includes several eukaryotic translation initiation factor 3 subunit 11 (eIF-3 p25) proteins. Eukaryotic initiation factor 3 (eIF3) is a multisubunit complex that is required for binding of mRNA to 40 S ribosomal subunits, stabilisation of ternary complex binding to 40 S subunits, and dissociation of 40 and 60 S subunits [7].

Description

This family of eukaryotic proteins brings together the yeast nuclear export factor Sac3 that localizes to cytoplasmic fibrils of nuclear pore complex PUBMED:12631707, and mammalian GANP/MCM3-associated proteins, which facilitate the nuclear localization of MCM3, a protein that associates with chromatin in the G1 phase of the cell-cycle.


Description text from InterPro entry IPR005062

Sequence information


Alignment

Seed (24)  Full (271)
Format:

Visualize domain structures

Seed (24)  Full (271)
display per page.

Species distribution

Tree depth:

Literature References

[1]
SAC3 may link nuclear protein export to cell cycle progression.
Jones AL, Quimby BB, Hood JK, Ferrigno P, Keshava PH, Silver PA, Corbett AH;
Proc Natl Acad Sci U S A 2000;97:3224-3229.
[2]
Identification of a novel MCM3-associated protein that facilitates MCM3 nuclear localization.
Takei Y, Tsujimoto G;
J Biol Chem 1998;273:22177-22180.
[3]
A novel nuclear phosphoprotein, GANP, is up-regulated in centrocytes of the germinal center and associated with MCM3, a protein essential for DNA replication.
Kuwahara K, Yoshida M, Kondo E, Sakata A, Watanabe Y, Abe E, Kouno Y, Tomiyasu S, Fujimura S, Tokuhisa T, Kimura H, Ezaki T, Sakaguchi N;
Blood 2000;95:2321-2328.
[4]
Characterization of the function of the NIN1 gene product of Saccharomyces cerevisiae.
Kominami K, Toh-e A;
Exp Cell Res 1994;211:203-211.
[5]
A conditional lethal mutant in the fission yeast 26 S protease subunit mts3+ is defective in metaphase to anaphase transition.
Gordon C, McGurk G, Wallace M, Hastie ND;
J Biol Chem 1996;271:5704-5711.
[6]
Characteristics of 26 S proteases from fission yeast mutants, which arrest in mitosis.
Seeger M, Gordon C, Ferrell K, Dubiel W;
J Mol Biol 1996;263:423-431.
[7]
Plant initiation factor 3 subunit composition resembles mammalian initiation factor 3 and has a novel subunit.
Burks EA, Bezerra PP, Le H, Gallie DR, Browning KS;
J Biol Chem 2001;276:2122-2131.

Database References

PFAMB
The following Pfam-B families contain sequences that according to Prodom are members of this Pfam-A family.
PB169233 PB172146 PB179720
INTERPRO IPR005062

HMMER build information

Pfam_ls [download HMM] Pfam_fs [download HMM]
Gathering cutoff -15.20 -15.20 18.50 18.50
Trusted cutoff -15.00 -15.00 19.30 20.80
Noise cutoff -15.30 -15.30 17.20 17.20
Build method of HMM hmmbuild -F HMM_ls SEED
hmmcalibrate --seed 0 HMM_ls
hmmbuild -f -F HMM_fs SEED
hmmcalibrate --seed 0 HMM_fs

Pfam specific information

Author of entryMifsud W, Moxon SJ, Waterfield DI, Finn RD, Bateman A
Type definitionFamily
Source of seed membersPfam-B_2845 (release 6.6) & Pfam-B_4388 (release 7.5)