Pfam 22.0 :: VacA2
Description of the VacA2 family
VacA <-- --> VacJ

VacA2


Accession number: PF03077
Putative vacuolating cytotoxin

This family contains a number of Helicobacter outer membrane proteins with multiple copies of this small conserved region.

Description

Proteins containing this domain include a number of Helicobacter pylori outer membrane proteins with multiple copies of this small conserved region.


Description text from InterPro entry IPR004311

Sequence information


Alignment

Seed (10)  Full (42)
Format:

Visualize domain structures

Seed (10)  Full (42)
display per page.

Species distribution

Tree depth:

Database References

PFAMB
The following Pfam-B family may contain sequences that according to Prodom are members of this Pfam-A family.
PB170755
INTERPRO IPR004311

HMMER build information

Pfam_ls [download HMM] Pfam_fs [download HMM]
Gathering cutoff 25.00 0.00 25.00 25.00
Trusted cutoff 113.90 26.90 112.00 27.80
Noise cutoff -6.10 -6.10 16.80 12.40
Build method of HMM hmmbuild -F HMM_ls SEED
hmmcalibrate --seed 0 HMM_ls
 hmmbuild -f -F HMM_fs SEED
hmmcalibrate --seed 0 HMM_fs

Pfam specific information

Author of entryGriffiths-Jones SR
Type definitionFamily
Source of seed membersPfam-B_2866 (release 6.4)