Pfam 22.0 :: Oest_recep
Description of the Oest_recep family
Ocular_alb <-- --> Ogr_Delta

Oest_recep


Accession number: PF02159
Oestrogen receptor

Description

The oestrogen receptors (ERs) are steroid or nuclear hormone receptors that act as transcription regulators involved in diverse physiological functions. Oestrogen receptors function as dimeric molecules in nuclei to regulate the transcription of target genes in a ligand-responsive manner. The ER consists of three functional and structural domains: an N-terminal modulatory domain, a highly conserved DNA-binding domain that recognises specific sequences (), and a C-terminal ligand-binding domain ().

The N-terminal modulatory domain spans the first 180 residues and contains the activation function 1 (AF1) region. Nuclear receptors differ considerably with respect to AF1 activity and regulation, as it is a poorly conserved region PUBMED:15831449. There is another activation function region, namely AF2, which resides in the C-terminal end of the ligand-binding domain. Transcription activation is facilitated by both AF1 and AF2, which appear to act synergistically in the ER complex PUBMED:15728727, PUBMED:14612550. For example, the ER can recruit TIF2 (transcription intermediary factor 2) via the AF1 and AF2 regions, whose synergistic action results in the activation of transcription.

This entry represents the AF1-containing modulatory domain found at the N-terminus in oestrogen alpha-type receptors.


Description text from InterPro entry IPR001292

Sequence information


Alignment

Seed (3)  Full (83)
Format:

Visualize domain structures

Seed (3)  Full (83)
display per page.

Species distribution

Tree depth:

Database References

PFAMB
The following Pfam-B families contain sequences that according to Prodom are members of this Pfam-A family.
PB178487 PB180863
PRINTS PR00543
SCOP 1hcp (family)
INTERPRO IPR001292

HMMER build information

Pfam_ls [download HMM] Pfam_fs [download HMM]
Gathering cutoff -84.70 -84.70 17.00 17.00
Trusted cutoff -84.60 -84.60 17.90 17.90
Noise cutoff -84.80 -84.80 14.80 14.80
Build method of HMM hmmbuild -F HMM_ls SEED
hmmcalibrate --seed 0 HMM_ls
hmmbuild -f -F HMM_fs SEED
hmmcalibrate --seed 0 HMM_fs

Pfam specific information

Author of entryMian N, Bateman A
Type definitionFamily
Source of seed membersIPR001292