Pfam 22.0 :: Browse Families

Pfam 22.0 :: Browse Families - V
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Browse Pfam

Available sections: Numbers A B C D E F G H I J K L M N O P Q R S T U V W X Y Z Top twenty families

Name	acc number	#seed	#full	av. len	av. %id	structure	Description
V
V-ATPase_C	PF03223	34	98	361 aa	38%		V-ATPase subunit C
V-ATPase_G	PF03179	36	118	99 aa	36%		Vacuolar (H+)-ATPase G subunit
V-ATPase_H	PF03224	6	78	306 aa	33%	1ho8	V-ATPase subunit H
V-set	PF07686	119	4601	106 aa	19%		Immunoglobulin V-set domain
V-set_CD47	PF08204	12	46	122 aa	44%		CD47 immunoglobulin-like domain
V-SNARE	PF05008	20	236	134 aa	21%		Vesicle transport v-SNARE protein
v110	PF01639	10	21	99 aa	45%		Viral family 110
V1R	PF03402	2	293	154 aa	37%		Vomeronasal organ pheromone receptor family, V1R
V4R	PF02830	53	195	63 aa	25%		V4R domain
VacA	PF02691	2	746	237 aa	38%		Vacuolating cyotoxin
VacA2	PF03077	10	42	60 aa	41%		Putative vacuolating cytotoxin
VacJ	PF04333	10	286	201 aa	36%		VacJ like lipoprotein
Vac_Fusion	PF02346	11	277	36 aa	61%		Chordopoxvirus fusion protein
VanW	PF04294	21	141	139 aa	35%		VanW like protein
VanY	PF02557	64	347	132 aa	27%		D-alanyl-D-alanine carboxypeptidase
VanZ	PF04892	22	401	109 aa	21%		VanZ like family
VapD	PF04605	19	31	97 aa	33%		Virulence-associated protein D (VapD)
VAR1	PF05316	5	11	343 aa	48%		Mitochondrial ribosomal protein (VAR1)
Varsurf_PPLC	PF03490	2	11	45 aa	67%		Variant-surface-glycoprotein phospholipase C
VASP_tetra	PF08776	6	45	38 aa	59%		VASP tetramerisation domain
vATP-synt_AC39	PF01992	14	165	328 aa	28%	1r5z	ATP synthase (C/AC39) subunit
vATP-synt_E	PF01991	17	188	193 aa	29%		ATP synthase (E/31 kDa) subunit
Vault	PF01505	19	263	53 aa	25%		Major Vault Protein repeat
VBS	PF08913	23	44	109 aa	40%		Vinculin Binding Site
VD10_N	PF08476	7	35	44 aa	56%		Viral D10 N-terminal
VDE	PF07137	7	57	150 aa	83%		Violaxanthin de-epoxidase (VDE)
Vert_HS_TF	PF06546	6	37	224 aa	36%		Vertebrate heat shock transcription factor
Vert_IL3-reg_TF	PF06529	2	15	320 aa	76%		Vertebrate interleukin-3 regulated transcription factor
Vesiculo_matrix	PF06326	11	27	171 aa	43%	1lg7	Vesiculovirus matrix protein
VGCC_alpha2	PF08473	2	35	90 aa	71%		Neuronal voltage-dependent calcium channel alpha 2acd
Vg_Tdu	PF07545	3	26	32 aa	71%		Vestigial/Tondu family
VHL	PF01847	2	14	136 aa	59%	1vcb	von Hippel-Lindau disease tumour suppressor protein
VHP	PF02209	15	164	36 aa	45%	1vii	Villin headpiece domain
Vhr1	PF04001	6	10	89 aa	67%		Transcription factor Vhr1
VHS	PF00790	15	263	128 aa	28%	1elk	VHS domain
Vicilin_N	PF04702	4	8	144 aa	45%		Vicilin N terminal region
VID27	PF08553	10	42	455 aa	41%		VID27 cytoplasmic protein
Vif	PF00559	10	2472	190 aa	77%		Retroviral Vif (Viral infectivity) protein
Vinculin	PF01044	10	119	456 aa	32%	1dow	Vinculin family
Viral-P_C	PF08380	8	71	202 aa	67%	1oks	Viral P-protein, C-terminal region
Viral_Beta_CD	PF04530	12	21	120 aa	37%		Viral Beta C/D like family
Viral_coat	PF00729	13	306	198 aa	32%	2tbv	Viral coat protein (S domain)
Viral_cys_rich	PF08008	15	27	78 aa	34%		Viral cysteine rich
Viral_DNA_bi	PF02236	10	57	86 aa	44%	1adu	Viral DNA-binding protein, all alpha domain
Viral_DNA_bp	PF00747	11	101	987 aa	30%		ssDNA binding protein
Viral_DNA_Zn_bi	PF03728	22	114	120 aa	32%	1adu	Viral DNA-binding protein, zinc binding domain
Viral_env	PF08791	5	40	31 aa	93%	1jek	Viral envelope protein
Viral_helicase1	PF01443	72	1032	230 aa	21%		Viral (Superfamily 1) RNA helicase
Viral_Hsp90	PF03225	17	47	505 aa	25%		Viral heat shock protein Hsp90 homologue
Viral_NABP	PF05515	8	113	99 aa	50%		Viral nucleic acid binding
Viral_P18	PF04521	10	23	118 aa	48%		ssRNA positive strand viral 18kD cysteine rich protein
Viral_protease	PF08715	5	252	218 aa	32%		Papain like viral protease
Viral_Rep	PF02407	19	354	82 aa	47%		Putative viral replication protein
Viral_Rep_C	PF08419	17	113	119 aa	50%		Viral replication domain C-terminal
VirB	PF08139	7	19	44 aa	49%		VirB/Tra/Trw family
VirB3	PF05101	11	138	86 aa	25%		Type IV secretory pathway, VirB3-like protein
VirB7	PF07269	3	9	52 aa	70%		VirB7 protein
VirB8	PF04335	29	178	169 aa	25%		VirB8 protein
VirC1	PF07015	2	12	191 aa	73%		VirC1 protein
VirC2	PF07181	5	10	201 aa	64%		VirC2 protein
VirD1	PF07328	2	10	146 aa	65%		T-DNA border endonuclease VirD1
VirDNA-topo-I_N	PF09266	13	50	57 aa	65%	1vcc	Viral DNA topoisomerase I, N-terminal
VirE	PF05272	10	95	187 aa	35%		Virulence-associated protein E
VirE2	PF07229	4	7	543 aa	68%		VirE2
VirE3	PF06661	4	11	264 aa	61%		VirE3
VirE_N	PF08800	15	19	127 aa	26%		VirE N-terminal domain
VirJ	PF06057	12	78	189 aa	42%		Bacterial virulence protein (VirJ)
VirK	PF06903	14	33	116 aa	33%		VirK protein
Virus_HS	PF01550	6	255	331 aa	84%		Virion host shutoff protein
VIT	PF08487	19	191	115 aa	30%		Vault protein inter-alpha-trypsin
VitD-bind_III	PF09164	6	12	68 aa	63%	1kxp	Vitamin D binding protein, domain III
Vitellogenin_N	PF01347	44	268	477 aa	21%	1llv	Lipoprotein amino terminal region
VKG_Carbox	PF05090	10	43	389 aa	41%		Vitamin K-dependent gamma-carboxylase
VKOR	PF07884	39	163	138 aa	23%		Vitamin K epoxide reductase family
VlpA_repeat	PF04649	6	35	13 aa	99%		Mycoplasma hyorhinis VlpA repeat
VLPT	PF07122	4	109	29 aa	67%		Variable length PCR target protein (VLPT)
VMA21	PF09446	22	51	63 aa	31%		VMA21-like domain
Vmethyltransf	PF01660	34	644	293 aa	30%		Viral methyltransferase
Vmethyltransf_C	PF08456	11	33	354 aa	38%		Viral methyltransferase C-terminal
vMSA	PF00695	4	6946	174 aa	75%		Major surface antigen from hepadnavirus
Voltage_CLC	PF00654	147	1037	347 aa	23%	1kpl	Voltage gated chloride channel
VOMI	PF03762	26	36	147 aa	31%	1vmo	Vitelline membrane outer layer protein I (VOMI)
VP4	PF00426	9	863	350 aa	64%	1kqr	Outer Capsid protein VP4 (Hemagglutinin)
VP40	PF07447	2	16	287 aa	59%	1h2c	Matrix protein VP40
VP7	PF00434	8	1524	286 aa	75%		Glycoprotein VP7
VP9	PF09625	6	12	75 aa	41%		VP9 protein
VPEP	PF07589	18	142	33 aa	41%		Protein of unknown function (DUF1555)
VPR	PF00522	12	3168	82 aa	79%	1dsk	VPR/VPX protein
Vps16_C	PF04840	5	68	240 aa	32%		Vps16, C-terminal region
Vps16_N	PF04841	5	71	273 aa	30%		Vps16, N-terminal region
Vps23_core	PF09454	21	94	58 aa	57%		Vps23 core domain
Vps26	PF03643	8	133	232 aa	38%		Vacuolar protein sorting-associated protein 26
VPS28	PF03997	6	51	182 aa	42%		VPS28 protein
Vps35	PF03635	30	90	673 aa	39%		Vacuolar protein sorting-associated protein 35
Vps4_C	PF09336	29	239	45 aa	36%		Vps4 C terminal oligomerisation domain
Vps5	PF09325	22	139	230 aa	27%		Vps5 C terminal like
Vps51	PF08700	67	152	83 aa	21%		Vps51/Vps67
Vps52	PF04129	6	76	465 aa	26%		Vps52 / Sac2 family
Vps53_N	PF04100	7	63	347 aa	33%		Vps53-like, N-terminal
Vps54	PF07928	19	52	134 aa	32%		Vps54-like protein
Vps55	PF04133	28	82	113 aa	38%		Vacuolar protein sorting 55
VPS9	PF02204	65	295	104 aa	25%		Vacuolar sorting protein 9 (VPS9) domain
Vpu	PF00558	16	2570	77 aa	64%	1vpu	Vpu protein
VQ	PF05678	54	99	31 aa	34%		VQ motif
VRP1	PF03538	4	61	146 aa	31%		Salmonella virulence plasmid 28.1kDa A protein
VRP3	PF03536	3	20	217 aa	76%		Salmonella virulence-associated 28kDa protein
VRR_NUC	PF08774	78	209	100 aa	23%		VRR-NUC domain
VSP	PF03302	6	224	181 aa	42%		Giardia variant-specific surface protein
Vsr	PF03852	7	109	73 aa	44%	1vsr	DNA mismatch endonuclease Vsr
VTC	PF09359	48	110	253 aa	27%		VTC domain
VWA	PF00092	191	3399	160 aa	17%	1lfa	von Willebrand factor type A domain
VWA_CoxE	PF05762	17	209	226 aa	24%		VWA domain containing CoxE-like protein
VWA_N	PF08399	14	81	115 aa	39%		VWA N-terminal
VWC	PF00093	20	717	58 aa	33%		von Willebrand factor type C domain
VWD	PF00094	65	693	133 aa	22%		von Willebrand factor type D domain
V_ATPase_I	PF01496	17	345	667 aa	27%		V-type ATPase 116kDa subunit family
V_cholerae_RfbT	PF05575	2	13	180 aa	92%		Vibrio cholerae RfbT protein

Available sections: Numbers A B C D E F G H I J K L M N O P Q R S T U V W X Y Z Top twenty families