Pfam 22.0 :: Browse Families

Pfam 22.0 :: Browse Families - R
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Browse Pfam

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Name	acc number	#seed	#full	av. len	av. %id	structure	Description
R
R3H	PF01424	37	385	55 aa	25%	1msz	R3H domain
RA	PF00788	59	584	85 aa	19%	1lxd	Ras association (RalGDS/AF-6) domain
Rab5-bind	PF09311	20	105	167 aa	40%		Rab5 binding
Rab5ip	PF07019	4	30	112 aa	46%		Rab5-interacting protein (Rab5ip)
Rabaptin	PF03528	3	39	118 aa	41%		Rabaptin
RabGGT_insert	PF07711	3	14	96 aa	63%		Rab geranylgeranyl transferase alpha-subunit, insert domain
Rac1	PF09632	2	8	296 aa	86%		Rac1-binding domain
Rad1	PF02144	3	34	162 aa	32%		Repair protein Rad1/Rec1/Rad17
Rad10	PF03834	6	58	68 aa	48%		DNA repair protein rad10
Rad17	PF03215	4	44	468 aa	30%		Rad17 cell cycle checkpoint protein
Rad21_Rec8	PF04824	16	108	50 aa	34%		Conserved region of Rad21 / Rec8 like protein
Rad21_Rec8_N	PF04825	14	119	110 aa	39%		N terminus of Rad21 / Rec8 like protein
Rad33	PF08730	5	6	192 aa	35%		Rad33
Rad4	PF03835	6	73	387 aa	28%		DNA repair protein Rad4
Rad50_zn_hook	PF04423	17	42	55 aa	22%	1l8d	Rad50 zinc hook motif
Rad51	PF08423	20	535	192 aa	43%	1n0w	Rad51
Rad52_Rad22	PF04098	9	82	139 aa	36%	1h2i	Rad52/22 family double-strand break repair protein
Rad54_N	PF08658	11	25	208 aa	40%		Rad54 N terminal
Rad9	PF04139	19	62	239 aa	25%		Rad9
Rad9_Rad53_bind	PF08605	8	14	137 aa	32%		Fungal Rad9-like Rad53-binding
RadC	PF04002	21	644	120 aa	37%		RadC, DNA repair protein
Radial_spoke	PF04712	6	51	382 aa	31%		Radial spokehead-like protein
Radial_spoke_3	PF06098	3	45	259 aa	43%		Radial spoke protein 3
Radical_SAM	PF04055	629	9927	168 aa	14%	1olt	Radical SAM superfamily
Radical_SAM_N	PF08497	18	163	334 aa	55%		Radical SAM N-terminal
Raffinose_syn	PF05691	11	82	557 aa	36%		Raffinose synthase or seed imbibition protein Sip1
RAG2	PF03089	6	1620	323 aa	60%		Recombination activating protein 2
RAI1	PF08652	17	51	66 aa	41%		RAI1 like
RALF	PF05498	22	60	62 aa	40%		Rapid ALkalinization Factor (RALF)
RAMP	PF04901	5	44	100 aa	42%		Receptor activity modifying family
RAMP4	PF06624	6	56	61 aa	52%		Ribosome associated membrane protein RAMP4
RAMPs	PF03787	78	350	211 aa	16%		RAMP superfamily
Ran-binding	PF05508	3	19	313 aa	41%		RanGTP-binding protein
RanGAP1_C	PF07834	3	24	173 aa	65%	1kps	RanGAP1 C-terminal domain
Ran_BP1	PF00638	8	244	120 aa	31%	1rrp	RanBP1 domain
RAP	PF08373	32	141	59 aa	26%		RAP domain
RAP-1	PF03085	6	60	190 aa	42%		Rhoptry-associated protein 1 (RAP-1)
RAP1	PF07218	2	20	502 aa	65%		Rhoptry-associated protein 1 (RAP-1)
Rap1-DNA-bind	PF09197	7	12	111 aa	49%	1ign	Rap1, DNA-binding
Rapamycin_bind	PF08771	32	89	98 aa	48%		Rapamycin binding domain
Rap_GAP	PF02145	7	212	182 aa	33%		Rap/ran-GAP
Ras	PF00071	61	5239	148 aa	33%	5p21	Ras family
RasGAP	PF00616	117	321	181 aa	24%	1wer	GTPase-activator protein for Ras-like GTPase
RasGAP_C	PF03836	9	74	134 aa	30%		RasGAP C-terminus
RasGEF	PF00617	12	574	190 aa	27%	1bkd	RasGEF domain
RasGEF_N	PF00618	81	491	108 aa	21%	1bkd	Guanine nucleotide exchange factor for Ras-like GTPases; N-terminal motif
RBB1NT	PF08169	3	42	95 aa	62%		RBB1NT (NUC162) domain
RBD	PF02196	11	167	70 aa	32%	1rrb	Raf-like Ras-binding domain
RBD-FIP	PF09457	11	68	44 aa	38%		FIP domain
RBDV_coat	PF06593	2	11	272 aa	92%		Raspberry bushy dwarf virus coat protein
RBFA	PF02033	11	545	105 aa	33%	1kkg	Ribosome-binding factor A
RBM1CTR	PF08081	7	38	45 aa	66%		RBM1CTR (NUC064) family
RbsD_FucU	PF05025	15	235	135 aa	33%	1oge	RbsD / FucU transport protein family
RB_A	PF01858	8	87	176 aa	39%	1gux	Retinoblastoma-associated protein A domain
RB_B	PF01857	7	93	122 aa	37%	1gux	Retinoblastoma-associated protein B domain
Rb_C	PF08934	7	26	130 aa	77%		Rb C-terminal domain
RcbX	PF02341	7	246	129 aa	76%		RbcX protein
RCC1	PF00415	7	1439	49 aa	32%	1a12	Regulator of chromosome condensation (RCC1)
RCC_reductase	PF06405	4	17	237 aa	46%		Red chlorophyll catabolite reductase (RCC reductase)
Rcd1	PF04078	5	90	250 aa	57%		Cell differentiation family, Rcd1-like
RcsC	PF09456	7	29	90 aa	48%		RcsC Alpha-Beta-Loop (ABL)
RCSD	PF05177	4	10	98 aa	44%		RCSD region
RDD	PF06271	42	612	142 aa	20%		RDD family
RdgC	PF04381	7	175	286 aa	39%		Putative exonuclease, RdgC
RdRP	PF05183	15	107	377 aa	33%		RNA dependent RNA polymerase
RdRP_1	PF00680	39	5202	205 aa	21%	1rdr	RNA dependent RNA polymerase
RdRP_2	PF00978	36	1036	280 aa	24%		RNA dependent RNA polymerase
RdRP_3	PF00998	33	5772	163 aa	59%	1quv	Viral RNA dependent RNA polymerase
RdRP_4	PF02123	28	352	268 aa	23%		Viral RNA-directed RNA-polymerase
RdRP_5	PF07925	2	69	305 aa	84%	1n35	Reovirus RNA-dependent RNA polymerase lambda 3
RDV-p3	PF09231	2	4	964 aa	60%	1uf2	Rice dwarf virus p3
RecA	PF00154	28	2423	234 aa	67%	2reb	recA bacterial DNA recombination protein
Recep_L_domain	PF01030	71	894	109 aa	32%	1igr	Receptor L domain
RecO	PF02565	6	461	235 aa	21%		Recombination protein O
Recombinase	PF07508	51	648	99 aa	23%		Recombinase
RecQ5	PF06959	2	13	194 aa	78%		RecQ helicase protein-like 5 (RecQ5)
RecR	PF02132	9	503	42 aa	35%		RecR protein
RecT	PF03837	20	150	199 aa	19%		RecT family
RecU	PF03838	12	117	162 aa	48%		Recombination protein U
RecX	PF02631	5	384	122 aa	22%		RecX family
Red1	PF07964	6	6	699 aa	28%		Rec10 / Red1
Redoxin	PF08534	69	1427	144 aa	21%		Redoxin
RED_C	PF07807	4	28	114 aa	69%		RED-like protein C-terminal region
RED_N	PF07808	8	50	174 aa	56%		RED-like protein N-terminal region
Reeler	PF02014	11	81	119 aa	28%		Reeler domain
REF	PF05755	6	19	186 aa	48%		Rubber elongation factor protein (REF)
Reg_prop	PF07494	673	2585	24 aa	22%		Two component regulator propeller
REJ	PF02010	5	33	482 aa	27%		REJ domain
Relaxase	PF03432	17	304	240 aa	16%		Relaxase/Mobilisation nuclease domain
RelA_SpoT	PF04607	105	1032	113 aa	42%	1vj7	Region found in RelA / SpoT proteins
RelB	PF04221	6	181	78 aa	26%		RelB antitoxin
Remorin_C	PF03763	14	67	109 aa	34%		Remorin, C-terminal region
Remorin_N	PF03766	6	14	57 aa	47%		Remorin, N-terminal region
Renin_r	PF07850	5	25	90 aa	55%		Renin receptor-like protein
Reoviridae_Vp9	PF08978	2	6	215 aa	66%		Reoviridae VP9
Reovirus_cap	PF00979	2	123	225 aa	57%	1jmu	Reovirus outer capsid protein, Sigma 3
Reovirus_L2	PF06016	4	27	1241 aa	51%		Reovirus core-spike protein lambda-2 (L2)
Reovirus_M2	PF05993	2	30	637 aa	54%		Reovirus major virion structural protein Mu-1/Mu-1C (M2)
Reovirus_Mu2	PF07781	4	34	710 aa	54%		Reovirus minor core protein Mu-2
Reo_P9	PF06043	3	13	342 aa	73%		Reovirus P9-like family
Reo_sigma1	PF01664	3	42	403 aa	52%	1kke	Reovirus viral attachment protein sigma 1
Reo_sigmaC	PF04582	4	80	199 aa	53%		Reovirus sigma C capsid protein
Rep-A_N	PF04057	11	57	97 aa	33%	1ewi	Replication factor-A protein 1, N-terminal domain
RepA1_leader	PF08048	5	19	24 aa	69%		Tap RepA1 leader peptide
RepA_C	PF04796	10	61	154 aa	33%		Plasmid encoded RepA protein
RepA_N	PF06970	24	90	75 aa	41%		Replication initiator protein A (RepA) N-terminus
RepB	PF07506	15	104	165 aa	22%		RepB plasmid partitioning protein
RepC	PF06504	3	28	265 aa	64%		Replication protein C (RepC)
RepL	PF05732	4	25	140 aa	46%		Firmicute plasmid replication protein (RepL)
Replicase	PF03090	15	137	133 aa	38%		Replicase family
Reprolysin	PF01421	39	645	191 aa	27%	1ast	Reprolysin (M12B) family zinc metalloprotease
Rep_1	PF01446	25	194	195 aa	38%		Replication protein
Rep_2	PF01719	13	55	178 aa	32%		Plasmid replication protein
Rep_3	PF01051	45	401	214 aa	20%	1rep	Initiator Replication protein
Rep_4	PF05797	6	10	288 aa	25%		Yeast trans-acting factor (REP1/REP2)
Rep_fac-A_3	PF08661	23	51	102 aa	23%		Replication factor A protein 3
Rep_fac-A_C	PF08646	34	118	141 aa	28%		Replication factor-A C terminal domain
Rep_fac_C	PF08542	84	265	89 aa	22%	1sxj	Replication factor C
Rep_N	PF08724	6	121	150 aa	57%	1m55	Rep protein catalytic domain like
Rep_Org_C	PF06926	3	14	91 aa	63%		Putative replisome organiser protein C-terminus
Rep_trans	PF02486	18	180	188 aa	21%		Replication initiation factor
Rer1	PF03248	8	86	167 aa	47%		Rer1 family
RES	PF08808	68	273	131 aa	19%		RES domain
ResB	PF05140	15	194	457 aa	24%		ResB-like family
ResIII	PF04851	55	2466	139 aa	21%		Type III restriction enzyme, res subunit
Resistin	PF06954	8	24	100 aa	51%		Resistin
Resolvase	PF00239	228	1957	130 aa	27%	1hcr	Resolvase, N terminal domain
Response_reg	PF00072	57	24254	110 aa	26%	3chy	Response regulator receiver domain
Reticulon	PF02453	13	330	178 aa	40%		Reticulon
Retinin_C	PF04527	9	30	66 aa	46%		Drosophila Retinin like protein
Retrotrans_gag	PF03732	57	2487	83 aa	27%		Retrotransposon gag protein
Retro_M	PF02813	3	153	79 aa	88%	1a6s	Retroviral M domain
REV	PF00424	13	2208	96 aa	68%	484d	REV protein (anti-repression trans-activator protein)
RE_AccI	PF09545	2	4	366 aa	90%		AccI restriction endonuclease
RE_Alw26IDE	PF09665	7	7	499 aa	35%		Type II restriction endonuclease (RE_Alw26IDE)
RE_AlwI	PF09491	13	26	381 aa	27%		AlwI restriction endonuclease
RE_ApaLI	PF09499	6	9	178 aa	46%		ApaLI-like restriction endonuclease
RE_Bpu10I	PF09549	7	10	183 aa	29%		Bpu10I restriction endonuclease
RE_Bsp6I	PF09504	3	3	178 aa	57%		Bsp6I restriction endonuclease
RE_BstXI	PF09552	3	3	283 aa	31%		BstXI restriction endonuclease
RE_CfrBI	PF09516	5	6	266 aa	34%		CfrBI restriction endonuclease
RE_Eco29kI	PF09517	5	8	168 aa	50%		Eco29kI restriction endonuclease
RE_Eco47II	PF09553	5	5	213 aa	31%		Eco47II restriction endonuclease
RE_HaeII	PF09554	3	5	337 aa	67%		HaeII restriction endonuclease
RE_HaeIII	PF09556	4	4	299 aa	49%		HaeIII restriction endonuclease
RE_HindIII	PF09518	5	10	296 aa	32%		HindIII restriction endonuclease
RE_HindVP	PF09519	3	5	278 aa	51%		HindVP restriction endonuclease
RE_HpaII	PF09561	4	6	353 aa	41%		HpaII restriction endonuclease
RE_LlaJI	PF09563	8	11	365 aa	30%		LlaJI restriction endonuclease
RE_LlaMI	PF09562	2	3	267 aa	65%		LlaMI restriction endonuclease
RE_MamI	PF09567	2	2	301 aa	29%		MamI restriction endonuclease
RE_MjaI	PF09568	2	2	196 aa	47%		MjaI restriction endonuclease
RE_MjaII	PF09520	12	17	199 aa	32%		MjaII restriction endonuclease
RE_NgoBV	PF09564	2	4	223 aa	92%		NgoBV restriction endonuclease
RE_NgoFVII	PF09565	7	10	280 aa	28%		NgoFVII restriction endonuclease
RE_NgoPII	PF09521	5	6	251 aa	56%		NgoPII restriction endonuclease
RE_R_Pab1	PF09522	5	6	119 aa	53%	2dvy	R.Pab1 restriction endonuclease
RE_SacI	PF09566	3	3	349 aa	24%		SacI restriction endonuclease
RE_ScaI	PF09569	4	4	191 aa	40%		ScaI restriction endonuclease
RE_SinI	PF09570	2	3	222 aa	62%		SinI restriction endonuclease
RE_TaqI	PF09573	4	6	237 aa	74%		TaqI restriction endonuclease
RE_XamI	PF09572	5	10	186 aa	36%		XamI restriction endonuclease
RE_XcyI	PF09571	3	8	289 aa	62%		XcyI restriction endonuclease
RF-1	PF00472	32	1549	113 aa	39%	1gqe	Peptidyl-tRNA hydrolase domain
RFC1	PF08519	24	72	153 aa	34%		Replication factor RFC1 C terminal domain
Rft-1	PF04506	4	55	447 aa	23%		Rft protein
RFX1_trans_act	PF04589	3	35	131 aa	56%		RFX1 transcription activation region
RFX_DNA_binding	PF02257	6	99	79 aa	46%	1dp7	RFX DNA-binding domain
RGM_C	PF06534	4	45	188 aa	54%		Repulsive guidance molecule (RGM) C-terminus
RGM_N	PF06535	2	31	195 aa	57%		Repulsive guidance molecule (RGM) N-terminus
RGP	PF03214	3	44	300 aa	71%		Reversibly glycosylated polypeptide
Rgp1	PF08737	21	52	339 aa	26%		Rgp1
RgpF	PF05045	7	101	196 aa	23%		Rhamnan synthesis protein F
RGS	PF00615	81	711	116 aa	25%	1gia	Regulator of G protein signaling domain
RGS-like	PF09128	9	38	182 aa	38%	1htj	Regulator of G protein signalling-like domain
RhaA	PF06134	5	47	416 aa	65%	1de5	L-rhamnose isomerase (RhaA)
Rhabdo_glycop	PF00974	8	1244	302 aa	35%		Rhabdovirus spike glycoprotein
Rhabdo_M1	PF03342	4	16	221 aa	62%		Rhabdovirus M1 matrix protein (M1 polymerase-associated protein)
Rhabdo_M2	PF04785	3	36	202 aa	89%		Rhabdovirus matrix protein M2
Rhabdo_matrix	PF03397	10	24	165 aa	63%		Rhabdovirus matrix protein
Rhabdo_ncap	PF00945	11	2996	161 aa	57%	1kbg	Rhabdovirus nucleocapsid protein
Rhabdo_ncap_2	PF03216	4	197	157 aa	68%		Rhabdovirus nucleoprotein
Rhabdo_NV	PF02484	2	21	110 aa	92%		Rhabdovirus Non-virion protein
Rhamnogal_lyase	PF06045	8	29	187 aa	41%		Rhamnogalacturonate lyase family
RhaT	PF06379	2	31	345 aa	62%		L-rhamnose-proton symport protein (RhaT)
RHD	PF00554	21	227	157 aa	36%	1svc	Rel homology domain (RHD)
RHD3	PF05879	8	94	421 aa	38%		Root hair defective 3 GTP-binding protein (RHD3)
RhgB_N	PF09284	6	21	237 aa	53%	1nkg	Rhamnogalacturonase B, N-terminal
RHH_1	PF01402	49	666	39 aa	24%	2cpg	Ribbon-helix-helix protein, copG family
RHH_2	PF03693	5	118	79 aa	32%		Uncharacterised protein family (UPF0156)
Rhodanese	PF00581	49	3347	103 aa	21%	2ora	Rhodanese-like domain
RhoGAP	PF00620	91	1263	147 aa	25%	1rgb	RhoGAP domain
RhoGEF	PF00621	13	1182	160 aa	23%	1dbh	RhoGEF domain
Rhomboid	PF01694	65	1119	149 aa	22%		Rhomboid family
Rho_Binding	PF08912	25	31	67 aa	56%		Rho Binding
Rho_GDI	PF02115	3	95	193 aa	42%	1rho	RHO protein GDP dissociation inhibitor
Rho_N	PF07498	46	527	42 aa	35%	1pv4	Rho termination factor, N-terminal domain
Rho_RNA_bind	PF07497	16	510	77 aa	58%	1pv4	Rho termination factor, RNA-binding domain
RHS	PF03527	18	199	39 aa	37%		RHS protein
RHSP	PF07999	4	288	493 aa	31%		Retrotransposon hot spot protein
RHS_repeat	PF05593	207	4658	39 aa	23%		RHS Repeat
Rhv	PF00073	50	10195	141 aa	23%	4rhv	picornavirus capsid protein
Rib	PF08428	16	385	62 aa	54%		Rib/alpha-like repeat
RIB43A	PF05914	4	37	303 aa	32%		RIB43A
RibD_C	PF01872	27	983	191 aa	23%		RibD C-terminal domain
Ribonuclease	PF00545	45	154	86 aa	29%	1brn	ribonuclease
Ribonuclease_3	PF00636	124	1145	101 aa	31%	1jfz	RNase3 domain
Ribonuclease_BN	PF03631	34	728	248 aa	20%		Ribonuclease BN-like family
Ribonuclease_P	PF00825	15	498	105 aa	29%	1a6f	Ribonuclease P
Ribonuclease_T2	PF00445	68	1064	148 aa	28%	1bol	Ribonuclease T2 family
Ribonuc_2-5A	PF06479	12	73	121 aa	35%		Ribonuclease 2-5A
Ribonuc_L-PSP	PF01042	30	1842	118 aa	27%	1qd9	Endoribonuclease L-PSP
Ribonuc_P_40	PF08584	9	26	261 aa	32%		Ribonuclease P 40kDa (Rpp40) subunit
Ribonuc_red_2_N	PF08471	11	76	104 aa	52%		Class II vitamin B12-dependent ribonucleotide reductase
Ribonuc_red_lgC	PF02867	14	1084	489 aa	28%	1rlr	Ribonucleotide reductase, barrel domain
Ribonuc_red_lgN	PF00317	81	834	78 aa	29%	1rlr	Ribonucleotide reductase, all-alpha domain
Ribonuc_red_sm	PF00268	13	1028	261 aa	27%	1rib	Ribonucleotide reductase, small chain
Ribophorin_I	PF04597	8	82	394 aa	36%		Ribophorin I
Ribophorin_II	PF05817	2	51	400 aa	42%		Ribophorin II (RPN2)
Ribosomal_60s	PF00428	22	545	86 aa	31%	1s4h	60s Acidic ribosomal protein
Ribosomal_L1	PF00687	13	851	195 aa	38%	1ad2	Ribosomal protein L1p/L10e family
Ribosomal_L10	PF00466	27	857	98 aa	28%	1m90	Ribosomal protein L10
Ribosomal_L11	PF00298	13	793	68 aa	42%	1fow	Ribosomal protein L11, RNA binding domain
Ribosomal_L11_N	PF03946	13	809	58 aa	49%	1mms	Ribosomal protein L11, N-terminal domain
Ribosomal_L12	PF00542	10	712	67 aa	56%	1ctf	Ribosomal protein L7/L12 C-terminal domain
Ribosomal_L13	PF00572	17	794	122 aa	42%	1m90	Ribosomal protein L13
Ribosomal_L13e	PF01294	6	147	161 aa	48%		Ribosomal protein L13e
Ribosomal_L14	PF00238	19	913	118 aa	51%	1whi	Ribosomal protein L14p/L23e
Ribosomal_L14e	PF01929	13	126	72 aa	34%		Ribosomal protein L14
Ribosomal_L15	PF01305	9	607	101 aa	47%		Ribosomal protein L15 amino terminal region
Ribosomal_L15e	PF00827	7	214	177 aa	59%	1q7y	Ribosomal L15
Ribosomal_L16	PF00252	59	1459	108 aa	47%	1q7y	Ribosomal protein L16p/L10e
Ribosomal_L17	PF01196	7	637	99 aa	49%	1gd8	Ribosomal protein L17
Ribosomal_L18ae	PF01775	6	125	162 aa	51%		Ribosomal L18ae protein family
Ribosomal_L18e	PF00828	6	155	160 aa	62%		Eukaryotic ribosomal protein L18
Ribosomal_L18p	PF00861	33	790	120 aa	35%	1m90	Ribosomal L18p/L5e family
Ribosomal_L19	PF01245	8	607	111 aa	52%		Ribosomal protein L19
Ribosomal_L19e	PF01280	7	186	137 aa	53%	1m90	Ribosomal protein L19e
Ribosomal_L2	PF00181	50	1095	74 aa	50%	1rl2	Ribosomal Proteins L2, RNA binding domain
Ribosomal_L20	PF00453	12	828	98 aa	52%	1gyz	Ribosomal protein L20
Ribosomal_L21e	PF01157	6	172	94 aa	46%	1m90	Ribosomal protein L21e
Ribosomal_L21p	PF00829	68	614	94 aa	41%		Ribosomal prokaryotic L21 protein
Ribosomal_L22	PF00237	19	932	109 aa	39%	1bxe	Ribosomal protein L22p/L17e
Ribosomal_L22e	PF01776	5	110	110 aa	53%		Ribosomal L22e protein family
Ribosomal_L23	PF00276	12	833	88 aa	36%	1m90	Ribosomal protein L23
Ribosomal_L23eN	PF03939	4	87	54 aa	48%		Ribosomal protein L23, N-terminal domain
Ribosomal_L24e	PF01246	7	215	68 aa	43%	1m90	Ribosomal protein L24e
Ribosomal_L25p	PF01386	6	455	87 aa	32%	1dfu	Ribosomal L25p family
Ribosomal_L27	PF01016	15	628	80 aa	59%		Ribosomal L27 protein
Ribosomal_L27e	PF01777	7	123	83 aa	50%		Ribosomal L27e protein family
Ribosomal_L28	PF00830	11	590	60 aa	41%		Ribosomal L28 family
Ribosomal_L28e	PF01778	5	94	118 aa	37%		Ribosomal L28e protein family
Ribosomal_L29	PF00831	82	694	58 aa	37%	1m90	Ribosomal L29 protein
Ribosomal_L29e	PF01779	6	81	39 aa	64%		Ribosomal L29e protein family
Ribosomal_L2_C	PF03947	60	1140	122 aa	52%	1rl2	Ribosomal Proteins L2, C-terminal domain
Ribosomal_L3	PF00297	13	822	209 aa	38%	1m90	Ribosomal protein L3
Ribosomal_L30	PF00327	14	672	51 aa	35%	1bxy	Ribosomal protein L30p/L7e
Ribosomal_L30_N	PF08079	30	131	69 aa	37%		Ribosomal L30 N-terminal domain
Ribosomal_L31	PF01197	10	595	72 aa	43%		Ribosomal protein L31
Ribosomal_L31e	PF01198	6	167	89 aa	46%	1m90	Ribosomal protein L31e
Ribosomal_L32e	PF01655	13	203	105 aa	51%	1m90	Ribosomal protein L32
Ribosomal_L32p	PF01783	58	648	54 aa	32%		Ribosomal L32p protein family
Ribosomal_L33	PF00471	10	744	49 aa	44%		Ribosomal protein L33
Ribosomal_L34	PF00468	8	541	44 aa	60%		Ribosomal protein L34
Ribosomal_L34e	PF01199	6	142	93 aa	46%		Ribosomal protein L34e
Ribosomal_L35Ae	PF01247	4	118	93 aa	48%		Ribosomal protein L35Ae
Ribosomal_L35p	PF01632	18	576	58 aa	41%		Ribosomal protein L35
Ribosomal_L36	PF00444	9	628	38 aa	59%	1dgz	Ribosomal protein L36
Ribosomal_L36e	PF01158	5	112	97 aa	49%		Ribosomal protein L36e
Ribosomal_L37	PF08561	24	50	126 aa	25%		Mitochondrial ribosomal protein L37
Ribosomal_L37ae	PF01780	9	149	87 aa	53%	1q7y	Ribosomal L37ae protein family
Ribosomal_L37e	PF01907	12	135	53 aa	57%	1m90	Ribosomal protein L37e
Ribosomal_L38e	PF01781	5	89	69 aa	57%		Ribosomal L38e protein family
Ribosomal_L39	PF00832	10	127	42 aa	58%	1m90	Ribosomal L39 protein
Ribosomal_L4	PF00573	25	808	194 aa	32%	1dmg	Ribosomal protein L4/L1 family
Ribosomal_L40e	PF01020	3	168	50 aa	70%		Ribosomal L40e family
Ribosomal_L41	PF05162	4	44	25 aa	91%		Ribosomal protein L41
Ribosomal_L44	PF00935	10	155	76 aa	56%	1m90	Ribosomal protein L44
Ribosomal_L5	PF00281	17	839	55 aa	45%	1m90	Ribosomal protein L5
Ribosomal_L5_C	PF00673	22	844	93 aa	47%	1m90	ribosomal L5P family C-terminus
Ribosomal_L6	PF00347	132	1533	74 aa	24%	1rl6	Ribosomal protein L6
Ribosomal_L6e	PF01159	7	114	105 aa	45%		Ribosomal protein L6e
Ribosomal_L6e_N	PF03868	6	45	60 aa	45%		Ribosomal protein L6, N-terminal domain
Ribosomal_L7Ae	PF01248	54	867	92 aa	23%	1cn9	Ribosomal protein L7Ae/L30e/S12e/Gadd45 family
Ribosomal_L9_C	PF03948	11	551	85 aa	34%	1div	Ribosomal protein L9, C-terminal domain
Ribosomal_L9_N	PF01281	13	607	48 aa	46%	1div	Ribosomal protein L9, N-terminal domain
Ribosomal_LX	PF01911	6	32	53 aa	39%		Ribosomal LX protein
Ribosomal_MRP8	PF07957	7	8	217 aa	33%		Mitochondrial Ribosomal protein MRP8
Ribosomal_S10	PF00338	15	742	93 aa	50%	1fjg	Ribosomal protein S10p/S20e
Ribosomal_S11	PF00411	13	963	104 aa	51%	1fjg	Ribosomal protein S11
Ribosomal_S12	PF00164	18	1224	113 aa	61%	1fjg	Ribosomal protein S12
Ribosomal_S13	PF00416	15	958	107 aa	44%	1fjg	Ribosomal protein S13/S18
Ribosomal_S13_N	PF08069	30	161	59 aa	54%		Ribosomal S13/S15 N-terminal domain
Ribosomal_S14	PF00253	21	957	54 aa	41%	1fjg	Ribosomal protein S14p/S29e
Ribosomal_S15	PF00312	9	861	82 aa	39%	1a32	Ribosomal protein S15
Ribosomal_S16	PF00886	15	822	55 aa	46%	1n32	Ribosomal protein S16
Ribosomal_S17	PF00366	15	768	68 aa	45%	1rip	Ribosomal protein S17
Ribosomal_S17e	PF00833	5	153	105 aa	53%		Ribosomal S17
Ribosomal_S18	PF01084	16	856	50 aa	51%	1n32	Ribosomal protein S18
Ribosomal_S19	PF00203	22	1029	75 aa	50%	1qkh	Ribosomal protein S19
Ribosomal_S19e	PF01090	8	177	132 aa	44%		Ribosomal protein S19e
Ribosomal_S2	PF00318	19	1246	192 aa	39%	1n32	Ribosomal protein S2
Ribosomal_S20p	PF01649	14	555	82 aa	40%	1n32	Ribosomal protein S20
Ribosomal_S21	PF01165	7	515	53 aa	49%		Ribosomal protein S21
Ribosomal_S21e	PF01249	5	108	78 aa	52%		Ribosomal protein S21e
Ribosomal_S22	PF08136	2	14	44 aa	75%		30S ribosomal protein subunit S22 family
Ribosomal_S23p	PF05635	10	135	105 aa	35%		S23 ribosomal protein
Ribosomal_S24e	PF01282	6	155	82 aa	46%		Ribosomal protein S24e
Ribosomal_S25	PF03297	6	102	101 aa	53%		S25 ribosomal protein
Ribosomal_S26e	PF01283	6	133	107 aa	58%		Ribosomal protein S26e
Ribosomal_S27	PF01599	12	225	44 aa	60%		Ribosomal protein S27a
Ribosomal_S27e	PF01667	7	169	53 aa	57%	1qxf	Ribosomal protein S27
Ribosomal_S28e	PF01200	4	142	66 aa	59%	1ne3	Ribosomal protein S28e
Ribosomal_S30	PF04758	5	120	57 aa	66%		Ribosomal protein S30
Ribosomal_S30AE	PF02482	16	568	95 aa	32%	1n3g	Sigma 54 modulation protein / S30EA ribosomal protein
Ribosomal_S3Ae	PF01015	11	209	188 aa	48%		Ribosomal S3Ae family
Ribosomal_S3_C	PF00189	25	1086	79 aa	49%	1n32	Ribosomal protein S3, C-terminal domain
Ribosomal_S3_N	PF00417	25	881	61 aa	42%	1n32	Ribosomal protein S3, N-terminal domain
Ribosomal_S4	PF00163	18	3917	81 aa	61%	1c06	Ribosomal protein S4/S9 N-terminal domain
Ribosomal_S4e	PF00900	12	197	76 aa	50%		Ribosomal family S4e
Ribosomal_S5	PF00333	13	827	66 aa	48%	1pkp	Ribosomal protein S5, N-terminal domain
Ribosomal_S5_C	PF03719	11	823	72 aa	41%	1pkp	Ribosomal protein S5, C-terminal domain
Ribosomal_S6	PF01250	12	568	91 aa	33%	1ris	Ribosomal protein S6
Ribosomal_S6e	PF01092	7	201	117 aa	54%		Ribosomal protein S6e
Ribosomal_S7	PF00177	21	1140	145 aa	42%	1rss	Ribosomal protein S7p/S5e
Ribosomal_S7e	PF01251	5	160	155 aa	50%		Ribosomal protein S7e
Ribosomal_S8	PF00410	20	879	126 aa	39%	1sei	Ribosomal protein S8
Ribosomal_S8e	PF01201	34	279	180 aa	35%		Ribosomal protein S8e
Ribosomal_S9	PF00380	10	807	121 aa	45%	1n32	Ribosomal protein S9/S16
Ribul_P_3_epim	PF00834	13	752	195 aa	45%	1rpx	Ribulose-phosphate 3 epimerase family
Rib_5-P_isom_A	PF06026	59	502	172 aa	42%	1lk7	Ribose 5-phosphate isomerase A (phosphoriboisomerase A)
Rib_hydrolayse	PF02267	5	25	225 aa	40%	1lbe	ADP-ribosyl cyclase
Rib_recp_KP_reg	PF05104	2	21	129 aa	61%		Ribosome receptor lysine/proline rich region
RIC1	PF07064	4	45	261 aa	36%		RIC1
RICH	PF05062	26	148	65 aa	45%		RICH domain
Ricin_B_lectin	PF00652	99	781	108 aa	19%	1abr	Ricin-type beta-trefoil lectin domain
Rick_17kDa_Anti	PF05433	86	819	44 aa	37%		Rickettsia 17 kDa surface antigen
Rieske	PF00355	152	3249	89 aa	22%	1rie	Rieske [2Fe-2S] domain
Rifin_STEVOR	PF02009	16	388	287 aa	29%		Rifin/stevor family
RIH_assoc	PF08454	15	140	113 aa	36%		RyR and IP3R Homology associated
RIIa	PF02197	13	171	37 aa	31%	1r2a	Regulatory subunit of type II PKA R-subunit
RimK	PF08443	5	510	161 aa	29%		RimK-like ATP-grasp domain
RimM	PF01782	40	492	84 aa	24%		RimM N-terminal domain
RinB	PF06116	3	58	53 aa	83%		Transcriptional activator RinB
Ring_hydroxyl_A	PF00848	12	1156	154 aa	29%	1ndo	Ring hydroxylating alpha subunit (catalytic domain)
Ring_hydroxyl_B	PF00866	44	431	138 aa	26%	1ndo	Ring hydroxylating beta subunit
RINT1_TIP1	PF04437	5	44	340 aa	26%		RINT-1 / TIP-1 family
RIO1	PF01163	28	384	178 aa	29%		RIO1 family
Rio2_N	PF09202	29	91	81 aa	43%	1tqi	Rio2, N-terminal
RIP	PF00161	18	443	225 aa	30%	1paf	Ribosome inactivating protein
RLI	PF04068	18	192	33 aa	38%		Possible metal-binding domain in RNase L inhibitor, RLI
RMF	PF04957	3	68	55 aa	58%		Ribosome modulation factor
RmlD_sub_bind	PF04321	37	665	272 aa	33%	1kc1	RmlD substrate binding domain
RMMBL	PF07521	94	890	42 aa	30%		RNA-metabolising metallo-beta-lactamase
RmuC	PF02646	23	362	298 aa	27%		RmuC family
RnaseA	PF00074	30	389	119 aa	43%	7rsa	Pancreatic ribonuclease
RnaseH	PF00075	66	4118	123 aa	42%	1hrh	RNase H
RNaseH_C	PF09293	6	12	121 aa	44%	1tfr	T4 RNase H, C terminal
RNase_H1_sml	PF08615	26	46	130 aa	24%		Ribonuclease H1/H2 small subunit
RNase_H2-Ydr279	PF09468	21	55	281 aa	22%		Ydr279p protein family (RNase H2 complex component)
RNase_HII	PF01351	14	793	183 aa	35%	1eke	Ribonuclease HII
RNase_PH	PF01138	31	1909	131 aa	27%	1e3p	3' exoribonuclease family, domain 1
RNase_PH_C	PF03725	32	1663	68 aa	30%	1e3p	3' exoribonuclease family, domain 2
RNase_P_p30	PF01876	12	84	147 aa	26%		RNase P subunit p30
RNase_P_pop3	PF08228	5	11	140 aa	27%		RNase P subunit Pop3
RNase_P_Rpp14	PF01900	12	83	106 aa	23%		Rpp14/Pop5 family
RNA_bind	PF08675	2	13	85 aa	53%	1whv	RNA binding domain
RNA_capsid	PF03035	14	202	219 aa	55%		Calicivirus putative RNA polymerase/capsid protein
RNA_helicase	PF00910	76	1184	50 aa	37%		RNA helicase
RNA_ligase	PF09414	8	22	339 aa	39%		RNA ligase
RNA_lig_DRB0094	PF09513	9	17	347 aa	26%		Probable RNA ligase (RNA_lig_DRB0094)
RNA_lig_T4_1	PF09511	15	19	263 aa	32%		T4 RNA ligase (RNA_lig_T4_1)
RNA_pol	PF00940	17	216	380 aa	34%	4rnp	DNA-dependent RNA polymerase
RNA_polI_A14	PF08203	5	7	149 aa	32%		Yeast RNA polymerase I subunit RPA14
RNA_polI_A34	PF08208	5	8	224 aa	33%		Yeast RNA polymerase I subunit RPA34.5
RNA_pol_A_bac	PF01000	59	1390	117 aa	36%	1bdf	RNA polymerase Rpb3/RpoA insert domain
RNA_pol_A_CTD	PF03118	14	925	67 aa	46%	1coo	Bacterial RNA polymerase, alpha chain C terminal domain
RNA_pol_delta	PF05066	6	93	171 aa	38%		DNA-directed RNA polymerase delta subunit
RNA_pol_III_C17	PF09417	27	50	121 aa	30%		RNA polymerase III subunit C17
RNA_pol_I_A49	PF06870	6	47	286 aa	22%		A49-like RNA polymerase I associated factor
RNA_pol_I_TF	PF04090	3	10	189 aa	35%		RNA polymerase I specific initiation factor
RNA_pol_L	PF01193	138	1551	195 aa	30%	1bdf	RNA polymerase Rpb3/Rpb11 dimerisation domain
RNA_POL_M_15KD	PF02150	10	150	53 aa	27%	1i50	RNA polymerases M/15 Kd subunit
RNA_pol_N	PF01194	6	108	60 aa	54%	1ef4	RNA polymerases N / 8 kDa subunit
RNA_pol_Rbc25	PF08292	12	57	117 aa	34%		RNA polymerase III subunit Rpc25
RNA_pol_Rpa2_4	PF06883	9	61	57 aa	41%		RNA polymerase I, Rpa2 specific domain
RNA_pol_Rpb1_1	PF04997	25	2223	242 aa	31%	1i50	RNA polymerase Rpb1, domain 1
RNA_pol_Rpb1_2	PF00623	35	1505	144 aa	49%	1i50	RNA polymerase Rpb1, domain 2
RNA_pol_Rpb1_3	PF04983	113	1783	129 aa	28%	1i50	RNA polymerase Rpb1, domain 3
RNA_pol_Rpb1_4	PF05000	108	1465	94 aa	32%	1i50	RNA polymerase Rpb1, domain 4
RNA_pol_Rpb1_5	PF04998	27	1760	384 aa	27%	1i50	RNA polymerase Rpb1, domain 5
RNA_pol_Rpb1_6	PF04992	74	660	135 aa	37%	1i50	RNA polymerase Rpb1, domain 6
RNA_pol_Rpb1_7	PF04990	18	308	104 aa	60%	1i50	RNA polymerase Rpb1, domain 7
RNA_pol_Rpb1_R	PF05001	99	1062	14 aa	69%		RNA polymerase Rpb1 C-terminal repeat
RNA_pol_Rpb2_1	PF04563	21	2643	233 aa	31%	1i50	RNA polymerase beta subunit
RNA_pol_Rpb2_2	PF04561	22	2135	148 aa	30%	1i50	RNA polymerase Rpb2, domain 2
RNA_pol_Rpb2_3	PF04565	31	4059	60 aa	57%	1i50	RNA polymerase Rpb2, domain 3
RNA_pol_Rpb2_4	PF04566	12	1567	60 aa	57%	1i50	RNA polymerase Rpb2, domain 4
RNA_pol_Rpb2_5	PF04567	64	1590	62 aa	49%	1i50	RNA polymerase Rpb2, domain 5
RNA_pol_Rpb2_6	PF00562	57	3576	267 aa	33%	1i50	RNA polymerase Rpb2, domain 6
RNA_pol_Rpb2_7	PF04560	135	1372	76 aa	51%	1i50	RNA polymerase Rpb2, domain 7
RNA_pol_Rpb4	PF03874	15	91	109 aa	25%	1go3	RNA polymerase Rpb4
RNA_pol_Rpb5_C	PF01191	9	135	72 aa	48%	1dzf	RNA polymerase Rpb5, C-terminal domain
RNA_pol_Rpb5_N	PF03871	11	78	94 aa	31%	1i50	RNA polymerase Rpb5, N-terminal domain
RNA_pol_Rpb6	PF01192	34	576	53 aa	32%	1qkl	RNA polymerase Rpb6
RNA_pol_Rpb7_N	PF03876	68	224	71 aa	22%	1go3	RNA polymerase Rpb7-like, N-terminal domain
RNA_pol_Rpb8	PF03870	7	66	132 aa	36%	1i50	RNA polymerase Rpb8
RNA_pol_Rpc34	PF05158	5	66	290 aa	29%		RNA polymerase Rpc34 subunit
RNA_pol_Rpc4	PF05132	7	49	131 aa	28%		RNA polymerase III RPC4
RNA_pol_Rpc82	PF05645	19	51	239 aa	23%		RNA polymerase III subunit RPC82
RNA_replicase_B	PF03431	6	24	360 aa	42%		RNA replicase, beta-chain
RNB	PF00773	91	900	318 aa	31%		RNB domain
Rnf-Nqr	PF02508	11	556	192 aa	37%		Rnf-Nqr subunit, membrane protein
RNR_inhib	PF08591	12	23	119 aa	24%		Ribonucleotide reductase inhibitor
RNR_N	PF08343	38	185	80 aa	38%		Ribonucleotide reductase N-terminal
Robl_LC7	PF03259	41	310	91 aa	21%		Roadblock/LC7 domain
ROF	PF07073	7	59	78 aa	41%		Modulator of Rho-dependent transcription termination (ROF)
ROK	PF00480	14	1610	157 aa	28%		ROK family
ROKNT	PF08067	2	30	41 aa	89%		ROKNT (NUC014) domain
RolB_RolC	PF02027	38	93	191 aa	21%		RolB/RolC glucosidase family
Root_cap	PF06830	11	27	55 aa	54%		Root cap
Rop	PF01815	3	30	60 aa	62%	1rpo	Rop protein
ROS_MUCR	PF05443	17	131	131 aa	45%		ROS/MUCR transcriptional regulator protein
Rotamase	PF00639	13	1353	90 aa	32%	1pin	PPIC-type PPIASE domain
Rotavirus_VP3	PF06929	3	62	343 aa	67%		Rotavirus VP3 protein
Rotavirus_VP7	PF05868	3	26	185 aa	70%		Rotavirus major outer capsid protein VP7
Rota_Capsid_VP6	PF00980	3	171	272 aa	76%	1qhd	Rotavirus major capsid protein VP6
Rota_NS26	PF01525	2	90	189 aa	82%		Rotavirus NS26
Rota_NS35	PF02509	3	38	266 aa	74%	1l9v	Rotavirus non-structural protein 35
Rota_NS53	PF00981	11	84	406 aa	52%		Rotavirus RNA-binding Protein 53 (NS53)
Rota_NS6	PF04866	12	22	92 aa	89%		Rotavirus non-structural protein 6
Rota_NSP3	PF01665	5	54	241 aa	71%	1knz	Rotavirus non-structural protein NSP3
Rota_NSP4	PF01452	3	416	170 aa	87%	1g1i	Rotavirus non structural protein
Rota_VP2	PF05087	3	45	428 aa	69%		Rotavirus VP2 protein
Roughex	PF06020	3	12	333 aa	72%		Drosophila roughex protein
Rox3	PF08633	10	18	199 aa	34%		Rox3 mediator complex subunit
RP-C	PF03428	8	166	274 aa	38%		Replication protein C
RPAP1_C	PF08620	24	58	76 aa	40%		RPAP1-like, C-terminal
RPAP1_N	PF08621	21	53	49 aa	36%		RPAP1-like, N-terminal
RPA_C	PF08784	24	67	100 aa	25%		Replication protein A C terminal
RPE65	PF03055	9	536	373 aa	31%		Retinal pigment epithelial membrane protein
RPEL	PF02755	8	180	26 aa	48%		RPEL repeat
RPH3A_effector	PF02318	3	46	252 aa	34%	1zbd	Rabphilin-3A effector domain
RplB	PF04390	7	148	144 aa	29%		Rare lipoprotein B family
RPM2	PF08579	7	9	120 aa	35%		Mitochondrial ribonuclease P subunit (RPM2)
Rpn3_C	PF08375	11	74	65 aa	52%		Proteasome regulatory subunit C-terminal
RpoE2	PF04035	11	37	59 aa	42%		Archaeal DNA-directed RNA polymerase subunit E'' (RpoE'' or RpoE2)
Rpr2	PF04032	54	108	88 aa	27%		RNAse P Rpr2/Rpp21/SNM1 subunit domain
RPW8	PF05659	6	28	133 aa	46%		Arabidopsis broad-spectrum mildew resistance protein RPW8
RQC	PF09382	60	446	103 aa	29%		RQC domain
RRF	PF01765	18	599	163 aa	44%	1eh1	Ribosome recycling factor
Rrf2	PF02082	125	1086	118 aa	26%		Transcriptional regulator
RRM_1	PF00076	79	12425	66 aa	24%	1sxl	RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain)
RRM_2	PF04059	4	90	95 aa	49%		RNA recognition motif 2
RRM_3	PF08777	15	66	99 aa	34%	1owx	RNA binding motif
RRN3	PF05327	7	58	464 aa	26%		RNA polymerase I specific transcription initiation factor RRN3
RrnaAD	PF00398	20	994	240 aa	29%	1yub	Ribosomal RNA adenine dimethylase
rRNA_methylase	PF06962	18	119	139 aa	42%		Putative rRNA methylase
rRNA_processing	PF08524	7	17	105 aa	31%		rRNA processing
Rrp15p	PF07890	9	42	140 aa	30%		Rrp15p
RRS1	PF04939	6	72	163 aa	36%		Ribosome biogenesis regulatory protein (RRS1)
RR_TM4-6	PF06459	11	48	246 aa	39%		Ryanodine Receptor TM 4-6
RS4NT	PF08071	16	188	36 aa	61%		RS4NT (NUC023) domain
Rsbr_N	PF08678	5	14	130 aa	42%		Rsbr N terminal
RsbU_N	PF08673	11	42	76 aa	48%	1w53	Phosphoserine phosphatase RsbU, N-terminal domain
Rsc14	PF08586	3	4	100 aa	38%		RSC complex, Rsc14/Ldb7 subunit
RSD-2	PF07547	5	9	82 aa	31%		RSD-2 N-terminal domain
Rsd_AlgQ	PF04353	3	82	155 aa	41%		Regulator of RNA polymerase sigma(70) subunit, Rsd/AlgQ
RseA_C	PF03873	8	85	63 aa	28%		Anti sigma-E protein RseA, C-terminal domain
RseA_N	PF03872	7	158	74 aa	36%	1or7	Anti sigma-E protein RseA, N-terminal domain
RseC_MucC	PF04246	7	132	135 aa	26%		Positive regulator of sigma(E), RseC/MucC
Rsm1	PF08600	6	16	91 aa	36%		Rsm1-like
Rsm22	PF09243	8	98	300 aa	27%		Mitochondrial small ribosomal subunit Rsm22
RSV_NS2	PF03113	2	20	124 aa	88%		Respiratory synctial virus non-structural protein NS2
RTA1	PF04479	6	179	214 aa	29%		RTA1 like protein
RTBV_P12	PF06361	3	11	100 aa	90%		Rice tungro bacilliform virus P12 protein
RTBV_P46	PF06216	2	8	388 aa	88%		Rice tungro bacilliform virus P46 protein
RTC	PF01137	29	183	331 aa	26%	1qmi	RNA 3'-terminal phosphate cyclase
RtcR	PF06956	3	41	183 aa	60%		Regulator of RNA terminal phosphate cyclase
RTC_insert	PF05189	20	148	102 aa	28%	1qmi	RNA 3'-terminal phosphate cyclase (RTC), insert domain
RteC	PF09357	7	12	217 aa	31%		RteC protein
RTP	PF02334	3	7	122 aa	77%	1bm9	Replication terminator protein
RTP801_C	PF07809	6	26	117 aa	45%		RTP801 C-terminal region
Rtt102p	PF09510	5	5	124 aa	33%		Rtt102p-like transcription regulator protein
Rtt106	PF08512	30	98	146 aa	27%		Histone chaperone Rttp106-like
RTT109	PF08214	4	22	334 aa	36%		H3 K56 histone acetylation protein RTT109
RTX	PF02382	8	125	463 aa	52%		RTX N-terminal domain
RtxA	PF07634	104	543	18 aa	33%		RtxA repeat
RTX_C	PF08339	11	85	123 aa	39%		RTX C-terminal domain
Rubella_Capsid	PF05750	3	47	182 aa	96%		Rubella capsid protein
Rubella_E1	PF05748	2	245	372 aa	97%		Rubella membrane glycoprotein E1
Rubella_E2	PF05749	3	19	255 aa	96%		Rubella membrane glycoprotein E2
Rubis-subs-bind	PF09273	31	75	113 aa	24%	1p0y	Rubisco LSMT substrate-binding
RuBisCO_large	PF00016	16	19300	273 aa	77%	3rub	Ribulose bisphosphate carboxylase large chain, catalytic domain
RuBisCO_large_N	PF02788	16	18091	116 aa	82%	3rub	Ribulose bisphosphate carboxylase large chain, N-terminal domain
RuBisCO_small	PF00101	48	1108	71 aa	47%	3rub	Ribulose bisphosphate carboxylase, small chain
Rubredoxin	PF00301	43	663	42 aa	44%	7rxn	Rubredoxin
Rubrerythrin	PF02915	38	584	118 aa	23%	1b71	Rubrerythrin
RUN	PF02759	16	200	138 aa	24%		RUN domain
Runt	PF00853	7	116	118 aa	75%	1cmo	Runt domain
RunxI	PF08504	7	53	97 aa	67%		Runx inhibition domain
RusA	PF05866	20	174	119 aa	24%	1q8r	Endodeoxyribonuclease RusA
RuvA_C	PF07499	103	513	46 aa	31%	1bvs	RuvA, C-terminal domain
RuvA_N	PF01330	33	532	61 aa	35%	1cuk	RuvA N terminal domain
RuvB_C	PF05491	37	538	78 aa	53%	1hqc	Holliday junction DNA helicase ruvB C-terminus
RuvB_N	PF05496	35	542	50 aa	41%	1in7	Holliday junction DNA helicase ruvB N-terminus
RuvC	PF02075	9	425	147 aa	43%	1hjr	Crossover junction endodeoxyribonuclease RuvC
rve	PF00665	246	12830	136 aa	20%	2itg	Integrase core domain
RVP	PF00077	50	46483	93 aa	85%	1ida	Retroviral aspartyl protease
RVP_2	PF08284	7	844	114 aa	54%		Retroviral aspartyl protease
RVT_1	PF00078	158	57960	167 aa	71%	1hmv	Reverse transcriptase (RNA-dependent DNA polymerase)
RVT_2	PF07727	101	2750	146 aa	35%	1hmv	Reverse transcriptase (RNA-dependent DNA polymerase)
RVT_connect	PF06815	25	9084	65 aa	85%	1mu2	Reverse transcriptase connection domain
RVT_thumb	PF06817	41	21983	57 aa	89%	1mu2	Reverse transcriptase thumb domain
RWD	PF05773	129	339	116 aa	20%	1ukx	RWD domain
RWP-RK	PF02042	3	67	52 aa	56%		RWP-RK domain
RXT2_N	PF08595	11	19	134 aa	36%		RXT2-like, N-terminal
Rxt3	PF08642	14	28	113 aa	35%		Histone deacetylation protein Rxt3
RYDR_ITPR	PF01365	18	216	177 aa	24%	1n4k	RIH domain
RyR	PF02026	15	153	91 aa	38%		RyR domain
Rz1	PF06085	7	21	60 aa	59%		Lipoprotein Rz1 precursor
R_equi_Vir	PF05526	8	10	167 aa	37%		Rhodococcus equi virulence-associated protein

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