Pfam 22.0 :: Browse Families

Pfam 22.0 :: Browse Families - P
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Browse Pfam

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Name	acc number	#seed	#full	av. len	av. %id	structure	Description
P
P-II	PF00543	93	839	101 aa	51%	1pil	Nitrogen regulatory protein P-II
P-mevalo_kinase	PF04275	2	21	112 aa	53%		Phosphomevalonate kinase
P120R	PF08062	6	23	21 aa	45%		P120R (NUC006) repeat
P16-Arc	PF04699	10	80	141 aa	42%		ARP2/3 complex 16 kDa subunit (p16-Arc)
P19Arf_N	PF07392	7	23	51 aa	71%	1hn3	Cyclin-dependent kinase inhibitor 2a p19Arf N-terminus
P2	PF07194	24	113	83 aa	28%		P2 response regulator binding domain
P21-Arc	PF04062	5	66	171 aa	43%		P21-ARC (ARP2/3 complex 21 kDa subunit)
p25-alpha	PF05517	5	55	139 aa	38%		p25-alpha
P2X_receptor	PF00864	6	148	294 aa	44%		ATP P2X receptor
P2_Phage_GpR	PF06891	7	42	129 aa	43%		P2 phage tail completion protein R (GpR)
P30	PF07390	2	5	224 aa	99%		Mycoplasma P30 protein
P34-Arc	PF04045	5	69	209 aa	45%		Arp2/3 complex, 34 kD subunit p34-Arc
P35	PF02331	3	21	301 aa	60%	1p35	Apoptosis preventing protein
P3A	PF08727	12	328	59 aa	63%	1ng7	Poliovirus 3A protein like
p450	PF00067	50	8703	295 aa	20%	2cpp	Cytochrome P450
p47_phox_C	PF08944	17	23	57 aa	55%		NADPH oxidase subunit p47Phox, C terminal domain
P4Ha_N	PF08336	28	121	124 aa	30%		Prolyl 4-Hydroxylase alpha-subunit, N-terminal region
P53	PF00870	7	205	150 aa	62%	1gzh	P53 DNA-binding domain
P53_TAD	PF08563	7	74	24 aa	62%		P53 transactivation motif
P53_tetramer	PF07710	9	126	42 aa	47%	1olg	P53 tetramerisation motif
P68HR	PF08061	7	49	33 aa	52%		P68HR (NUC004) repeat
PA	PF02225	139	975	99 aa	19%	1cx8	PA domain
PA-IIL	PF07472	5	28	108 aa	48%	1uqx	Fucose-binding lectin II (PA-IIL)
PA-IL	PF07828	2	4	119 aa	70%	1l7l	PA-IL-like protein
PA14	PF07691	34	249	137 aa	17%		PA14 domain
PA26	PF04636	4	56	358 aa	53%		PA26 p53-induced protein (sestrin)
PA28_alpha	PF02251	4	64	62 aa	45%	1avo	Proteasome activator pa28 alpha subunit
PA28_beta	PF02252	4	85	134 aa	49%	1avo	Proteasome activator pa28 beta subunit
PaaA_PaaC	PF05138	6	209	276 aa	32%	1otk	Phenylacetic acid catabolic protein
PaaB	PF06243	7	94	87 aa	58%		Phenylacetic acid degradation B
PAAD_DAPIN	PF02758	39	146	81 aa	26%	1pn5	PAAD/DAPIN/Pyrin domain
PAAR_motif	PF05488	37	710	21 aa	34%		PAAR motif
PaaX	PF07848	13	86	66 aa	35%		PaaX-like protein
PaaX_C	PF08223	13	87	164 aa	26%		PaaX-like protein C-terminal domain
PABP	PF00658	7	198	69 aa	53%	1ifw	Poly-adenylate binding protein, unique domain
Pacifastin_I	PF05375	17	54	38 aa	40%	1kgm	Pacifastin inhibitor (LCMII)
PAD	PF03068	7	45	365 aa	51%		Protein-arginine deiminase (PAD)
PadR	PF03551	33	1051	78 aa	27%		Transcriptional regulator PadR-like family
PADR1	PF08063	9	43	53 aa	47%		PADR1 (NUC008) domain
PAD_M	PF08527	7	41	136 aa	45%	1wd8	Protein-arginine deiminase (PAD) middle domain
PAD_N	PF08526	7	41	106 aa	39%	1wd8	Protein-arginine deiminase (PAD) N-terminal domain
PAD_porph	PF04371	22	246	330 aa	34%		Porphyromonas-type peptidyl-arginine deiminase
PAE	PF03283	8	84	321 aa	36%		Pectinacetylesterase
PAF-AH_p_II	PF03403	8	125	329 aa	26%		Platelet-activating factor acetylhydrolase, plasma/intracellular isoform II
Paf1	PF03985	5	51	314 aa	36%		Paf1
PagL	PF09411	53	125	134 aa	24%		Lipid A 3-O-deacylase (PagL)
PagP	PF07017	4	38	145 aa	60%		Antimicrobial peptide resistance and lipid A acylation protein PagP
PAH	PF02671	75	296	47 aa	33%	1g1e	Paired amphipathic helix repeat
Paired_CXXCH_1	PF09699	184	378	40 aa	35%		Doubled CXXCH motif (Paired_CXXCH_1)
PAL	PF00221	10	686	410 aa	37%	1b8f	Phenylalanine and histidine ammonia-lyase
Pal1	PF08316	8	30	105 aa	50%		Pal1 cell morphology protein
PalH	PF08733	11	28	361 aa	29%		PalH/RIM21
PalI	PF08739	26	43	152 aa	29%		pH-response regulator, PalI / Rim9
Palm_thioest	PF02089	2	114	242 aa	37%	1exw	Palmitoyl protein thioesterase
PALP	PF00291	92	4490	292 aa	21%	1tdj	Pyridoxal-phosphate dependent enzyme
Pam16	PF03656	3	55	125 aa	40%		Pam16
Pam17	PF08566	14	21	174 aa	42%		Mitochondrial import protein Pam17
PAM2	PF07145	37	190	18 aa	44%	1jh4	Ataxin-2 C-terminal region
Pantoate_ligase	PF02569	7	526	267 aa	42%	1iho	Pantoate-beta-alanine ligase
Pantoate_transf	PF02548	8	521	256 aa	45%	1oy0	Ketopantoate hydroxymethyltransferase
PAN_1	PF00024	99	588	81 aa	17%	1bht	PAN domain
PAN_2	PF08276	106	576	64 aa	47%		PAN-like domain
PAN_3	PF08277	55	88	68 aa	22%		PAN-like domain
PaO	PF08417	21	71	97 aa	29%		Pheophorbide a oxygenase
PAP1	PF08601	11	26	305 aa	30%		Transcription factor PAP1
PAP2	PF01569	87	1907	121 aa	21%	1d2t	PAP2 superfamily
PAPA-1	PF04795	5	35	84 aa	37%		PAPA-1-like conserved region
PapB	PF03333	7	41	80 aa	47%		Adhesin biosynthesis transcription regulatory protein
PapG_C	PF03628	3	29	107 aa	80%		PapG chaperone-binding domain
PapG_N	PF03627	4	28	225 aa	59%	1j8s	PapG carbohydrate binding domain
Papilloma_E5	PF03025	8	87	68 aa	77%		Papillomavirus E5
Papilloma_E5A	PF05776	5	10	91 aa	69%		Papillomavirus E5A protein
Papo_T_antigen	PF02380	6	85	90 aa	57%		T-antigen specific domain
PAPS_reduct	PF01507	27	958	192 aa	27%	1sur	Phosphoadenosine phosphosulfate reductase family
PAP_assoc	PF03828	29	207	62 aa	29%		Poly(A) polymerase
PAP_central	PF04928	26	161	291 aa	44%	1f5a	Poly(A) polymerase central domain
Pap_E4	PF02711	13	80	94 aa	42%		E4 protein
PAP_fibrillin	PF04755	13	105	183 aa	32%		PAP_fibrillin
PAP_PilO	PF06864	3	26	338 aa	32%		Pilin accessory protein (PilO)
PAP_RNA-bind	PF04926	13	126	145 aa	31%	1f5a	Poly(A) polymerase predicted RNA binding domain
PAR1	PF06521	5	7	184 aa	55%		PAR1 protein
Paralemmin	PF03285	2	45	173 aa	44%		Paralemmin
Paramecium_SA	PF01508	78	2280	62 aa	26%		Paramecium surface antigen domain
Paramyxovirus_V	PF06641	2	16	248 aa	62%		Paramyxovirus structural protein V
Paramyxo_C	PF01692	3	34	194 aa	73%		Paramyxovirus non-structural protein c
Paramyxo_ncap	PF00973	9	1977	177 aa	68%	1fzk	Paramyxovirus nucleocapsid protein
Paramyxo_NS_C	PF02725	5	46	164 aa	63%		Non-structural protein C
Paramyxo_P	PF01806	4	38	470 aa	56%	1ezj	Paramyxovirus P phosphoprotein
Paramyx_P_V	PF03210	5	171	311 aa	41%		Paramyxovirus P/V phosphoprotein
Paramyx_RNA_pol	PF00946	21	479	811 aa	26%		Paramyxovirus RNA dependent RNA polymerase
Parathyroid	PF01279	5	60	107 aa	42%	1zwg	Parathyroid hormone family
ParB	PF08775	22	39	122 aa	37%		ParB family
ParBc	PF02195	51	1372	88 aa	29%		ParB-like nuclease domain
ParBc_2	PF08857	15	60	168 aa	36%		Putative ParB-like nuclease
ParD	PF09386	4	9	78 aa	78%		Antitoxin ParD
Pardaxin	PF07425	3	5	33 aa	95%		Pardaxin
Parecho_VpG	PF06344	4	9	20 aa	90%		Parechovirus Genome-linked protein
PaREP1	PF05942	54	102	114 aa	23%		Archaeal PaREP1/PaREP8 family
PaRep2a	PF07903	6	34	79 aa	56%		PaRep2a protein
PaRep2b	PF07775	9	30	338 aa	42%		PaRep2b protein
ParG	PF09274	3	6	67 aa	52%	1p94	ParG
PARG_cat	PF05028	6	70	236 aa	40%		Poly (ADP-ribose) glycohydrolase (PARG)
PARP	PF00644	29	278	172 aa	26%	1paw	Poly(ADP-ribose) polymerase catalytic domain
PARP_reg	PF02877	5	92	135 aa	39%	1paw	Poly(ADP-ribose) polymerase, regulatory domain
PARP_regulatory	PF01358	6	67	271 aa	54%	1v39	Poly A polymerase regulatory subunit
Parvo_coat	PF00740	14	885	390 aa	32%	4dpv	Parvovirus coat protein VP2
Parvo_coat_N	PF08398	11	460	61 aa	59%		Parvovirus coat protein VP1
Parvo_NS1	PF01057	13	310	215 aa	39%		Parvovirus non-structural protein NS1
PAS	PF00989	49	6795	95 aa	17%	2phy	PAS fold
PASTA	PF03793	242	1473	60 aa	22%	1qme	PASTA domain
PAS_2	PF08446	41	504	83 aa	47%	2phy	PAS fold
PAS_3	PF08447	122	4843	89 aa	19%	2phy	PAS fold
PAS_4	PF08448	49	4472	100 aa	17%	2phy	PAS fold
PAS_5	PF07310	10	57	137 aa	25%		PAS domain
PAS_6	PF08348	37	192	116 aa	33%		YheO-like PAS domain
Pas_Saposin	PF09016	3	9	75 aa	73%		Pas factor saposin fold
Patatin	PF01734	56	1712	186 aa	21%	1oxw	Patatin-like phospholipase
Patched	PF02460	10	259	709 aa	21%		Patched family
PAX	PF00292	6	561	111 aa	70%	1pdn	'Paired box' domain
Paxillin	PF03535	2	17	194 aa	66%		Paxillin family
PAXNEB	PF05625	7	51	329 aa	31%		PAXNEB protein
PAZ	PF02170	58	390	138 aa	20%	1r4k	PAZ domain
PA_decarbox	PF05870	4	33	131 aa	65%		Phenolic acid decarboxylase (PAD)
PB1	PF00564	53	436	83 aa	18%	1ipg	PB1 domain
PBAN	PF05874	3	25	167 aa	71%		Pheromone biosynthesis activating neuropeptide (PBAN)
PBC	PF03792	4	76	163 aa	79%	1lfu	PBC domain
PBCV_basic_adap	PF08789	9	14	38 aa	40%		PBCV-specific basic adaptor domain
PBD	PF00786	49	387	53 aa	33%	1cee	P21-Rho-binding domain
PBP	PF01161	17	700	145 aa	25%	1beh	Phosphatidylethanolamine-binding protein
PBP5_C	PF07943	75	510	92 aa	25%	1hd8	Penicillin-binding protein 5, C-terminal domain
PBP_dimer	PF03717	58	1726	161 aa	24%	1k25	Penicillin-binding Protein dimerisation domain
PBP_GOBP	PF01395	72	601	118 aa	17%	1c3z	PBP/GOBP family
PBP_sp32	PF07222	2	9	226 aa	68%		Proacrosin binding protein sp32
PBS_linker_poly	PF00427	23	268	136 aa	38%		Phycobilisome Linker polypeptide
PC4	PF02229	6	66	86 aa	34%	1pcf	Transcriptional Coactivator p15 (PC4)
PCAF_N	PF06466	4	26	245 aa	56%		PCAF (P300/CBP-associated factor) N-terminal domain
Pcc1	PF09341	16	46	74 aa	31%		Transcription factor Pcc1
PCEMA1	PF07418	2	22	237 aa	52%		Acidic phosphoprotein precursor PCEMA1
PcF	PF09461	5	20	45 aa	70%		Phytotoxin PcF protein
PCI	PF01399	77	930	106 aa	17%		PCI domain
PCMT	PF01135	9	626	174 aa	35%	1dl5	Protein-L-isoaspartate(D-aspartate) O-methyltransferase (PCMT)
PCNA_C	PF02747	12	223	116 aa	37%	1plq	Proliferating cell nuclear antigen, C-terminal domain
PCNA_N	PF00705	13	235	109 aa	39%	1plq	Proliferating cell nuclear antigen, N-terminal domain
PCP	PF02429	7	117	129 aa	63%	1ppr	Peridinin-chlorophyll A binding protein
PCP_red	PF08369	38	166	44 aa	48%		Proto-chlorophyllide reductase 57 kD subunit
PcrB	PF01884	6	98	220 aa	33%	1viz	PcrB family
PCRF	PF03462	67	1170	112 aa	38%	1gqe	PCRF domain
PC_rep	PF01851	161	1339	33 aa	20%		Proteasome/cyclosome repeat
PD-C2-AF1	PF09310	2	13	219 aa	66%		POU domain, class 2, associating factor 1
PD40	PF07676	142	3821	37 aa	22%	1crz	WD40-like Beta Propeller Repeat
PDCD2_C	PF04194	2	104	160 aa	28%		Programmed cell death protein 2, C-terminal putative domain
PDCD9	PF07147	5	18	432 aa	40%		Mitochondrial 28S ribosomal protein S30 (PDCD9)
PDE6_gamma	PF04868	2	37	76 aa	80%		Retinal cGMP phosphodiesterase, gamma subunit
PDE8	PF08629	2	12	21 aa	79%		PDE8 phosphodiesterase
PDEase_I	PF00233	8	535	232 aa	32%	1f0j	3'5'-cyclic nucleotide phosphodiesterase
PDEase_II	PF02112	5	46	295 aa	33%		cAMP phosphodiesterases class-II
PDEase_I_N	PF08499	6	57	58 aa	66%		3'5'-cyclic nucleotide phosphodiesterase N-terminal
PDGF	PF00341	3	211	73 aa	40%	1pdg	Platelet-derived growth factor (PDGF)
PDGF_N	PF04692	7	57	62 aa	55%	1pdg	Platelet-derived growth factor, N terminal region
PDH	PF02153	10	501	264 aa	27%		Prephenate dehydrogenase
PDR_assoc	PF08370	38	57	65 aa	42%		Plant PDR ABC transporter associated
PDR_CDR	PF06422	35	283	139 aa	29%		CDR ABC transporter
PDT	PF00800	11	596	172 aa	33%	1ecm	Prephenate dehydratase
PduL	PF06130	26	168	76 aa	32%		Propanediol utilisation protein PduL
PdxA	PF04166	16	429	295 aa	38%	1r8k	Pyridoxal phosphate biosynthetic protein PdxA
PdxJ	PF03740	9	343	234 aa	47%	1ixq	Pyridoxal phosphate biosynthesis protein PdxJ
PDZ	PF00595	58	5612	76 aa	22%		PDZ domain (Also known as DHR or GLGF)
PE	PF00934	9	488	91 aa	49%		PE family
PE-PPE	PF08237	6	126	222 aa	31%		PE-PPE domain
Pea-VEAacid	PF08111	2	2	15 aa	93%		Pea-VEAacid family
PEARLI-4	PF05278	6	17	249 aa	51%		Arabidopsis phospholipase-like protein (PEARLI 4)
Pecanex_C	PF05041	3	44	177 aa	52%		Pecanex protein (C-terminus)
Pectate_lyase	PF03211	12	90	211 aa	31%	1ee6	Pectate lyase
Pectate_lyase_2	PF06917	2	20	502 aa	50%		Periplasmic pectate lyase
Pectinesterase	PF01095	36	445	251 aa	36%	1qjv	Pectinesterase
Pec_lyase	PF09492	42	54	286 aa	39%		Pectic acid lyase (pec_lyase)
Pec_lyase_C	PF00544	10	320	189 aa	32%	2pec	Pectate lyase
Pec_lyase_N	PF04431	8	35	47 aa	47%		Pectate lyase, N terminus
Pedibin	PF08182	2	4	38 aa	75%		Pedibin/Hym-346 family
PEGA	PF08308	32	220	65 aa	26%		PEGA domain
PEGSRP	PF07623	6	15	26 aa	75%		Protein of unknown function (DUF1584)
Pellino	PF04710	4	37	352 aa	63%		Pellino
PemK	PF02452	11	319	103 aa	29%	1ne8	PemK-like protein
PEMT	PF04191	4	49	173 aa	51%		Phospholipid methyltransferase
Penaeidin	PF05927	4	41	73 aa	69%	1ueo	Penaeidin
Pencillinase_R	PF03965	48	375	111 aa	24%	1p6r	Penicillinase repressor
Penicil_amidase	PF01804	21	298	641 aa	22%	1pnk	Penicillin amidase
Pentapeptide	PF00805	95	3479	39 aa	25%		Pentapeptide repeats (8 copies)
Pentapeptide_2	PF01469	8	1573	35 aa	40%		Pentapeptide repeats (8 copies)
Pentaxin	PF00354	9	164	187 aa	34%	1sac	Pentaxin family
PEP-utilisers_N	PF05524	44	657	123 aa	27%	3eza	PEP-utilising enzyme, N-terminal
PEP-utilizers	PF00391	84	1485	82 aa	32%	1dik	PEP-utilising enzyme, mobile domain
PEP-utilizers_C	PF02896	17	1235	288 aa	33%	1dik	PEP-utilising enzyme, TIM barrel domain
Pep3_Vps18	PF05131	8	66	142 aa	28%		Pep3/Vps18/deep orange family
PEPcase	PF00311	2	1018	485 aa	41%	1fiy	Phosphoenolpyruvate carboxylase
PEPCK	PF00821	9	653	306 aa	60%	1khf	Phosphoenolpyruvate carboxykinase
PEPCK_ATP	PF01293	11	332	446 aa	48%	1ayl	Phosphoenolpyruvate carboxykinase
Pepsin-I3	PF06394	11	28	75 aa	33%	1f34	Pepsin inhibitor-3-like repeated domain
PepSY	PF03413	209	847	65 aa	16%	1qf2	Peptidase propeptide and YPEB domain
PepSY_TM	PF03929	216	1587	29 aa	22%		PepSY-associated TM helix
Peptidase_A17	PF05380	6	36	124 aa	37%		Pao retrotransposon peptidase
Peptidase_A21	PF03566	4	28	623 aa	72%	1ohf	Peptidase family A21
Peptidase_A22B	PF04258	14	163	280 aa	29%		Signal peptide peptidase
Peptidase_A24	PF01478	105	703	108 aa	24%		Type IV leader peptidase family
Peptidase_A25	PF03418	2	44	318 aa	50%	1c8b	Germination protease
Peptidase_A3	PF02160	6	31	183 aa	44%		Cauliflower mosaic virus peptidase (A3)
Peptidase_A4	PF01828	4	30	198 aa	47%	1s2b	Peptidase A4 family
Peptidase_A6	PF01829	3	5	359 aa	50%	1nov	Peptidase A6 family
Peptidase_A8	PF01252	11	614	151 aa	32%		Signal peptidase (SPase) II
Peptidase_C1	PF00112	158	2347	189 aa	34%	1aec	Papain family cysteine protease
Peptidase_C10	PF01640	2	33	266 aa	47%	1dki	Peptidase C10 family
Peptidase_C11	PF03415	7	35	331 aa	25%		Clostripain family
Peptidase_C12	PF01088	101	273	217 aa	23%	1uch	Ubiquitin carboxyl-terminal hydrolase, family 1
Peptidase_C13	PF01650	37	227	210 aa	34%		Peptidase C13 family
Peptidase_C14	PF00656	118	788	212 aa	19%	1ice	Caspase domain
Peptidase_C15	PF01470	9	187	194 aa	38%	1aug	Pyroglutamyl peptidase
Peptidase_C16	PF01831	2	47	231 aa	71%		Peptidase C16 family
Peptidase_C1_2	PF03051	13	155	396 aa	40%	1a6r	Peptidase C1-like family
Peptidase_C2	PF00648	9	489	254 aa	32%	1dkv	Calpain family cysteine protease
Peptidase_C21	PF05381	13	25	104 aa	39%		Tymovirus endopeptidase
Peptidase_C23	PF05379	12	72	86 aa	44%		Carlavirus endopeptidase
Peptidase_C24	PF03510	5	59	102 aa	37%		2C endopeptidase (C24) cysteine protease family
Peptidase_C25	PF01364	2	26	287 aa	41%	1cvr	Peptidase family C25
Peptidase_C25_C	PF03785	3	17	79 aa	56%	1cvr	Peptidase family C25, C terminal ig-like domain
Peptidase_C26	PF07722	46	414	204 aa	31%		Peptidase C26
Peptidase_C27	PF05407	5	41	166 aa	98%		Rubella virus endopeptidase
Peptidase_C28	PF05408	4	268	189 aa	76%	1qol	Foot-and-mouth virus L-proteinase
Peptidase_C3	PF00548	20	1074	163 aa	45%	1hav	3C cysteine protease (picornain 3C)
Peptidase_C30	PF05409	5	172	276 aa	56%	1lvo	Coronavirus endopeptidase C30
Peptidase_C31	PF05410	3	55	105 aa	90%		Porcine arterivirus-type cysteine proteinase alpha
Peptidase_C32	PF05411	4	42	127 aa	72%		Equine arteritis virus putative proteinase
Peptidase_C33	PF05412	4	73	96 aa	62%		Equine arterivirus Nsp2-type cysteine proteinase
Peptidase_C34	PF05413	2	7	92 aa	67%		Putative closterovirus papain-like endopeptidase
Peptidase_C36	PF05415	2	3	104 aa	88%		Beet necrotic yellow vein furovirus-type papain-like endopeptidase
Peptidase_C37	PF05416	5	62	505 aa	67%		Southampton virus-type processing peptidase
Peptidase_C39	PF03412	36	493	127 aa	23%		Peptidase C39 family
Peptidase_C4	PF00863	39	598	222 aa	56%	1lvm	Peptidase family C4
Peptidase_C41	PF05417	4	97	142 aa	77%		Hepatitis E cysteine protease
Peptidase_C42	PF05533	8	93	73 aa	64%		Beet yellows virus-type papain-like endopeptidase C42
Peptidase_C47	PF05543	4	29	175 aa	68%	1cv8	Staphopain peptidase C47
Peptidase_C48	PF02902	27	672	132 aa	29%	1euv	Ulp1 protease family, C-terminal catalytic domain
Peptidase_C5	PF00770	13	68	170 aa	62%	1avp	Adenovirus endoprotease
Peptidase_C50	PF03568	20	70	348 aa	24%		Peptidase family C50
Peptidase_C53	PF05550	5	394	156 aa	76%		Pestivirus Npro endopeptidase C53
Peptidase_C54	PF03416	14	138	289 aa	31%		Peptidase family C54
Peptidase_C57	PF03290	5	50	422 aa	67%		Vaccinia virus I7 processing peptidase
Peptidase_C58	PF03543	14	36	173 aa	30%	1ukf	Yersinia/Haemophilus virulence surface antigen
Peptidase_C6	PF00851	19	512	409 aa	51%		Helper component proteinase
Peptidase_C69	PF03577	17	145	371 aa	36%		Peptidase family C69
Peptidase_C7	PF01830	14	74	89 aa	67%		Peptidase C7 family
Peptidase_C78	PF07910	25	78	180 aa	31%		Peptidase family C78
Peptidase_C8	PF03569	2	4	209 aa	64%		Peptidase family C8
Peptidase_C9	PF01707	8	77	202 aa	52%		Peptidase family C9
Peptidase_M1	PF01433	36	1225	355 aa	25%	1hs6	Peptidase family M1
Peptidase_M10	PF00413	69	714	152 aa	36%	2srt	Matrixin
Peptidase_M10_C	PF08548	15	98	239 aa	44%		Peptidase M10 serralysin C terminal
Peptidase_M11	PF05548	6	18	309 aa	30%		Gametolysin peptidase M11
Peptidase_M13	PF01431	24	503	192 aa	36%	1dmt	Peptidase family M13
Peptidase_M13_N	PF05649	25	498	347 aa	24%	1dmt	Peptidase family M13
Peptidase_M14	PF00246	125	1013	239 aa	21%	1cbx	Zinc carboxypeptidase
Peptidase_M15	PF01427	5	193	194 aa	29%		D-ala-D-ala dipeptidase
Peptidase_M15_2	PF05951	10	131	149 aa	45%		Bacterial protein of unknown function (DUF882)
Peptidase_M15_3	PF08291	19	90	106 aa	27%		Peptidase M15
Peptidase_M16	PF00675	26	1719	130 aa	23%	1bgy	Insulinase (Peptidase family M16)
Peptidase_M16_C	PF05193	184	2353	172 aa	16%	1kb9	Peptidase M16 inactive domain
Peptidase_M17	PF00883	17	827	295 aa	41%	1lam	Cytosol aminopeptidase family, catalytic domain
Peptidase_M17_N	PF02789	103	556	122 aa	22%	1lam	Cytosol aminopeptidase family, N-terminal domain
Peptidase_M18	PF02127	9	227	415 aa	34%		Aminopeptidase I zinc metalloprotease (M18)
Peptidase_M19	PF01244	51	370	312 aa	27%	1itq	Membrane dipeptidase (Peptidase family M19)
Peptidase_M2	PF01401	6	157	478 aa	40%		Angiotensin-converting enzyme
Peptidase_M20	PF01546	373	3779	308 aa	14%	1cg2	Peptidase family M20/M25/M40
Peptidase_M22	PF00814	114	1297	245 aa	25%		Glycoprotease family
Peptidase_M23	PF01551	278	2368	97 aa	34%	1qwy	Peptidase family M23
Peptidase_M24	PF00557	22	2749	221 aa	24%	1mat	metallopeptidase family M24
Peptidase_M26_C	PF07580	7	28	691 aa	51%		M26 IgA1-specific Metallo-endopeptidase C-terminal region
Peptidase_M26_N	PF05342	8	23	250 aa	53%		M26 IgA1-specific Metallo-endopeptidase N-terminal region
Peptidase_M27	PF01742	13	111	350 aa	42%	3bta	Clostridial neurotoxin zinc protease
Peptidase_M28	PF04389	68	812	161 aa	24%	1de4	Peptidase family M28
Peptidase_M29	PF02073	3	188	365 aa	35%		Thermophilic metalloprotease (M29)
Peptidase_M3	PF01432	29	1083	394 aa	22%	1i1i	Peptidase family M3
Peptidase_M32	PF02074	3	194	471 aa	34%	1ka4	Carboxypeptidase Taq (M32) metallopeptidase
Peptidase_M35	PF02102	4	54	326 aa	33%	1eb6	Deuterolysin metalloprotease (M35) family
Peptidase_M36	PF02128	2	70	332 aa	51%		Fungalysin metallopeptidase (M36)
Peptidase_M3_N	PF08439	93	347	68 aa	24%		Oligopeptidase F
Peptidase_M4	PF01447	13	385	124 aa	38%	8tln	Thermolysin metallopeptidase, catalytic domain
Peptidase_M41	PF01434	31	1163	194 aa	38%	1lv7	Peptidase family M41
Peptidase_M42	PF05343	69	427	280 aa	29%	1vhe	M42 glutamyl aminopeptidase
Peptidase_M43	PF05572	2	34	101 aa	52%		Pregnancy-associated plasma protein-A
Peptidase_M44	PF03410	3	42	595 aa	65%		Protein G1
Peptidase_M48	PF01435	21	1633	176 aa	23%		Peptidase family M48
Peptidase_M49	PF03571	3	89	514 aa	42%		Peptidase family M49
Peptidase_M4_C	PF02868	12	377	144 aa	39%	8tln	Thermolysin metallopeptidase, alpha-helical domain
Peptidase_M50	PF02163	70	1204	280 aa	21%		Peptidase family M50
Peptidase_M55	PF04951	5	68	261 aa	37%	1hi9	D-aminopeptidase
Peptidase_M56	PF05569	12	216	88 aa	28%		BlaR1 peptidase M56
Peptidase_M6	PF05547	5	106	426 aa	36%		Immune inhibitor A peptidase M6
Peptidase_M61	PF05299	10	167	119 aa	39%		M61 glycyl aminopeptidase
Peptidase_M64	PF09471	15	24	245 aa	28%		IgA Peptidase M64
Peptidase_M7	PF02031	4	10	124 aa	62%	1kuh	Streptomyces extracellular neutral proteinase (M7) family
Peptidase_M74	PF03411	3	82	244 aa	47%		Penicillin-insensitive murein endopeptidase
Peptidase_M75	PF09375	48	251	285 aa	22%		Imelysin
Peptidase_M8	PF01457	8	453	278 aa	31%	1lml	Leishmanolysin
Peptidase_M9	PF01752	7	143	268 aa	37%		Collagenase
Peptidase_M9_N	PF08453	20	131	148 aa	33%		Peptidase family M9 N-terminal
Peptidase_S10	PF00450	72	735	385 aa	23%	1whs	Serine carboxypeptidase
Peptidase_S11	PF00768	12	1043	236 aa	31%	1skf	D-alanyl-D-alanine carboxypeptidase
Peptidase_S13	PF02113	9	297	353 aa	26%		D-Ala-D-Ala carboxypeptidase 3 (S13) family
Peptidase_S15	PF02129	48	372	264 aa	22%	1l7q	X-Pro dipeptidyl-peptidase (S15 family)
Peptidase_S21	PF00716	11	97	295 aa	28%	1cmv	Assemblin (Peptidase family S21)
Peptidase_S24	PF00717	235	2357	74 aa	24%	1umu	Peptidase S24-like
Peptidase_S28	PF05577	13	213	389 aa	26%		Serine carboxypeptidase S28
Peptidase_S29	PF02907	9	2360	145 aa	87%	1a1r	Hepatitis C virus NS3 protease
Peptidase_S3	PF00944	5	218	116 aa	64%	1kxf	Alphavirus core protein
Peptidase_S30	PF01577	26	770	228 aa	32%		Potyvirus P1 protease
Peptidase_S31	PF05578	4	166	161 aa	88%		Pestivirus NS3 polyprotein peptidase S31
Peptidase_S32	PF05579	6	60	338 aa	67%	1mbm	Equine arteritis virus serine endopeptidase S32
Peptidase_S37	PF05576	2	13	405 aa	41%		PS-10 peptidase S37
Peptidase_S39	PF02122	5	210	294 aa	42%		Putative replicase 1 (ORF2)
Peptidase_S41	PF03572	146	1798	171 aa	34%	1k32	Peptidase family S41
Peptidase_S48	PF03574	3	95	147 aa	85%		Peptidase family S48
Peptidase_S49	PF01343	20	1015	138 aa	27%		Peptidase family S49
Peptidase_S49_N	PF08496	24	117	152 aa	46%		Peptidase family S49 N-terminal
Peptidase_S51	PF03575	24	191	154 aa	25%	1fy2	Peptidase family S51
Peptidase_S55	PF05580	6	54	202 aa	52%		SpoIVB peptidase S55
Peptidase_S58	PF03576	4	211	328 aa	32%	1b65	Peptidase family S58
Peptidase_S6	PF02395	9	123	666 aa	42%		Immunoglobulin A1 protease
Peptidase_S64	PF08192	4	8	645 aa	40%		Peptidase family S64
Peptidase_S66	PF02016	21	348	276 aa	27%		LD-carboxypeptidase
Peptidase_S7	PF00949	13	506	160 aa	59%	1bef	Peptidase S7, Flavivirus NS3 serine protease
Peptidase_S8	PF00082	45	2706	280 aa	23%	1cse	Subtilase family
Peptidase_S9	PF00326	70	1434	201 aa	22%	1qfs	Prolyl oligopeptidase family
Peptidase_S9_N	PF02897	30	456	393 aa	21%	1qfs	Prolyl oligopeptidase, N-terminal beta-propeller domain
Peptidase_U32	PF01136	41	782	233 aa	29%		Peptidase family U32
Peptidase_U35	PF04586	36	218	155 aa	25%		Caudovirus prohead protease
Peptidase_U4	PF03419	3	41	275 aa	32%		Sporulation factor SpoIIGA
Peptidase_U57	PF05582	7	41	271 aa	48%		YabG peptidase U57
Peptidase_U9	PF03420	2	21	184 aa	47%		Prohead core protein protease
Pept_tRNA_hydro	PF01195	10	609	180 aa	38%	2pth	Peptidyl-tRNA hydrolase
PepX_C	PF08530	64	343	237 aa	18%		X-Pro dipeptidyl-peptidase C-terminal non-catalytic domain
PepX_N	PF09168	18	58	144 aa	38%	1lns	X-Prolyl dipeptidyl aminopeptidase PepX, N-terminal
Pep_deformylase	PF01327	14	934	156 aa	35%	1def	Polypeptide deformylase
Pep_M12B_propep	PF01562	37	474	138 aa	28%	1fvl	Reprolysin family propeptide
Per1	PF04080	5	52	260 aa	35%		Per1-like
PerB	PF06590	2	6	129 aa	95%		PerB protein
PerC	PF06069	4	15	88 aa	50%		PerC transcriptional activator
Pericardin_rpt	PF07054	5	157	32 aa	62%		Pericardin like repeat
Perilipin	PF03036	8	84	297 aa	34%		Perilipin family
Peripla_BP_1	PF00532	6	3727	225 aa	18%	8abp	Periplasmic binding proteins and sugar binding domain of the LacI family
Peripla_BP_2	PF01497	32	1696	215 aa	18%	1efd	Periplasmic binding protein
Periviscerokin	PF08259	3	49	11 aa	76%		Periviscerokinin family
peroxidase	PF00141	295	1983	262 aa	24%	1hsr	Peroxidase
Peroxidase_2	PF01328	2	41	88 aa	48%	1cpo	Peroxidase, family 2
Peroxin-13_N	PF04088	5	39	153 aa	36%		Peroxin 13, N-terminal
Peroxin-3	PF04882	7	52	408 aa	29%		Peroxin-3
Pertactin	PF03212	8	449	113 aa	45%	1dab	Pertactin
Pertus-S4-tox	PF09275	2	3	110 aa	99%	1prt	Pertussis toxin S4 subunit
Pertus-S5-tox	PF09276	2	3	97 aa	94%	1prt	Pertussis toxin S5 subunit
Pertussis_S1	PF02917	2	13	114 aa	48%	1bcp	Pertussis toxin, subunit 1
Pertussis_S2S3	PF02918	2	9	109 aa	58%	1bcp	Pertussis toxin, subunit 2 and 3, C-terminal domain
Pes-10	PF07149	5	5	371 aa	31%		Pes-10
Pescadillo_N	PF06732	9	68	257 aa	45%		Pescadillo N-terminus
PET	PF06297	11	132	101 aa	47%		PET Domain
PET122	PF05476	4	8	254 aa	34%		PET122
Pet127	PF08634	11	28	260 aa	46%		Mitochondrial protein Pet127
Pet20	PF08692	6	10	86 aa	37%		Mitochondrial protein Pet20
PetG	PF02529	6	129	36 aa	77%		Cytochrome B6-F complex subunit 5
PetL	PF05115	6	168	30 aa	78%		Cytochrome B6-F complex subunit VI (PetL)
PetM	PF08041	14	45	34 aa	46%		PetM family of cytochrome b6f complex subunit 7
PetN	PF03742	8	310	28 aa	85%		PetN
PEX-1N	PF09262	25	51	80 aa	33%	1wlf	Peroxisome biogenesis factor 1, N-terminal
PEX-2N	PF09263	2	8	86 aa	62%	1wlf	Peroxisome biogenesis factor 1, N-terminal
PEX11	PF05648	12	91	219 aa	23%		Peroxisomal biogenesis factor 11 (PEX11)
Pex14_N	PF04695	8	74	117 aa	30%	1n5z	Peroxisomal membrane anchor protein (Pex14p) conserved region
Pex16	PF08610	11	48	325 aa	26%		Peroxisomal membrane protein (Pex16)
Pex19	PF04614	7	59	221 aa	27%		Pex19 protein family
Pex24p	PF06398	8	60	317 aa	23%		Integral peroxisomal membrane peroxin
Pex26	PF07163	2	11	282 aa	64%		Pex26 protein
Pex2_Pex12	PF04757	18	158	220 aa	16%		Pex2 / Pex12 amino terminal region
PFEMP	PF03011	41	226	144 aa	28%		PFEMP DBL domain
Pfg27	PF09216	2	5	176 aa	70%	1n81	Pfg27
PFK	PF00365	12	915	274 aa	33%	5pfk	Phosphofructokinase
PfkB	PF00294	67	3390	243 aa	19%	1rkd	pfkB family carbohydrate kinase
PFL	PF02901	11	360	583 aa	34%	3pfl	Pyruvate formate lyase
PFU	PF09070	30	61	107 aa	40%		PFU (PLAA family ubiquitin binding)
PGA2	PF07543	2	10	109 aa	33%		Protein trafficking PGA2
PGAM	PF00300	277	3047	151 aa	23%	3pgm	Phosphoglycerate mutase family
PGAMP	PF07644	4	5	34 aa	49%		Planctomycete PGAMP
PGAP1	PF07819	20	191	191 aa	24%		PGAP1-like protein
PGA_cap	PF09587	142	240	245 aa	27%		Bacterial capsule synthesis protein PGA_cap
PGI	PF00342	10	1360	337 aa	37%	1pgi	Phosphoglucose isomerase
PGK	PF00162	19	1011	362 aa	45%	3pgk	Phosphoglycerate kinase
PglZ	PF08665	16	67	174 aa	23%		PglZ domain
PGM_PMM_I	PF02878	89	2302	123 aa	29%	3pmg	Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain I
PGM_PMM_II	PF02879	16	2322	101 aa	29%	3pmg	Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain II
PGM_PMM_III	PF02880	16	2199	109 aa	23%	3pmg	Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain III
PGM_PMM_IV	PF00408	15	1633	64 aa	28%	3pmg	Phosphoglucomutase/phosphomannomutase, C-terminal domain
PgpA	PF04608	88	318	146 aa	30%		Phosphatidylglycerophosphatase A
PG_binding_1	PF01471	239	1731	57 aa	25%	1lbu	Putative peptidoglycan binding domain
PG_binding_2	PF08823	9	23	65 aa	29%		Putative peptidoglycan binding domain
PG_binding_3	PF09374	20	88	72 aa	31%		Predicted Peptidoglycan domain
PH	PF00169	144	3840	105 aa	17%	1dyn	PH domain
Ph1570	PF09638	4	4	153 aa	62%		Ph1570 protein
PhaC_N	PF07167	39	568	99 aa	54%		Poly-beta-hydroxybutyrate polymerase (PhaC) N-terminus
Phage-Gp8	PF09215	9	20	262 aa	39%	1n7z	Bacteriophage T4, Gp8
Phage-MuB_C	PF09077	8	10	76 aa	41%	1f6v	Mu B transposition protein, C terminal
Phage-scaffold	PF09306	2	9	286 aa	91%		Bacteriophage, scaffolding protein
Phage-tail_1	PF09097	4	9	194 aa	51%	1k28	Baseplate structural protein, domain 1
Phage-tail_2	PF09096	5	8	170 aa	53%	1k28	Baseplate structural protein, domain 2
PhageP22-tail	PF09251	2	15	384 aa	79%	1tyv	Salmonella phage P22 tailspike
Phageshock_PspD	PF09584	5	23	64 aa	67%		Phage shock protein PspD (Phageshock_PspD)
Phageshock_PspG	PF09583	9	32	65 aa	59%		Phage shock protein G (Phageshock_PspG)
Phage_1_1	PF08200	5	14	42 aa	58%		Bacteriophage 1.1 Protein
Phage_30_3	PF08010	19	26	149 aa	65%		Bacteriophage protein GP30.3
Phage_30_8	PF06019	2	15	110 aa	91%		Phage GP30.8 protein
Phage_AlpA	PF05930	23	373	50 aa	29%		Prophage CP4-57 regulatory protein (AlpA)
Phage_antitermQ	PF06530	4	64	123 aa	46%		Phage antitermination protein Q
Phage_antiter_Q	PF06323	3	17	223 aa	51%		Phage antitermination protein Q
Phage_attach	PF05354	3	21	114 aa	65%	1k0h	Phage Head-Tail Attachment
Phage_B	PF02304	3	50	117 aa	56%	1cd3	Scaffold protein B
Phage_base_V	PF04717	8	105	97 aa	37%		Phage-related baseplate assembly protein
Phage_BR0599	PF09356	23	70	76 aa	37%		Phage conserved hypothetical protein BR0599
Phage_C1	PF09593	27	172	115 aa	46%		Phage_C1 protein
Phage_capsid	PF05065	25	245	269 aa	20%		Phage capsid family
Phage_Capsid_P3	PF09018	3	7	394 aa	100%		P3 major capsid protein
Phage_cap_E	PF03864	2	28	331 aa	54%		Phage major capsid protein E
Phage_cap_P2	PF05125	5	79	324 aa	48%		Phage major capsid protein, P2 family
Phage_CII	PF05269	3	47	80 aa	45%		Bacteriophage CII protein
Phage_CI_repr	PF07022	14	69	61 aa	27%		Bacteriophage CI repressor helix-turn-helix domain
Phage_coat	PF09063	2	2	127 aa	96%	1dwn	Phage PP7 coat protein
Phage_Coat_A	PF05357	3	7	67 aa	45%	1g3p	Phage Coat Protein A
Phage_Coat_B	PF05356	2	6	76 aa	74%		Phage Coat protein B
Phage_Coat_Gp8	PF05371	7	12	49 aa	62%	1fdm	Phage major coat protein, Gp8
Phage_connector	PF05352	3	5	285 aa	56%	1jnb	Phage Connector (GP10)
Phage_CP76	PF06892	4	18	161 aa	45%		Phage regulatory protein CII (CP76)
Phage_CRI	PF05144	6	20	245 aa	31%		Phage replication protein CRI
Phage_DNA_bind	PF02303	3	27	83 aa	37%	1gvp	Helix-destabilising protein
Phage_E	PF06158	8	49	85 aa	45%		Phage tail protein E
Phage_endo_I	PF05367	2	18	136 aa	62%	1m0d	Phage endonuclease I
Phage_F	PF02305	7	58	433 aa	62%	2bpa	Capsid protein (F protein)
Phage_fiber	PF03335	38	243	13 aa	36%		Phage tail fibre repeat
Phage_fiber_2	PF03406	12	178	43 aa	50%		Phage tail fibre repeat
Phage_fiber_C	PF06820	2	45	63 aa	62%		Putative prophage tail fibre C-terminus
Phage_FRD3	PF05798	3	24	75 aa	79%		Bacteriophage FRD3 protein
Phage_G	PF02306	3	52	173 aa	51%	2bpa	Major spike protein (G protein)
Phage_Gp111	PF07410	2	7	105 aa	74%		Streptococcus thermophilus bacteriophage Gp111 protein
Phage_Gp15	PF06854	3	18	177 aa	51%		Bacteriophage Gp15 protein
Phage_Gp19	PF09355	8	22	116 aa	40%		Phage protein Gp19/Gp15/Gp42
Phage_GP20	PF06810	5	36	150 aa	33%		Phage minor structural protein GP20
Phage_GPA	PF05840	8	64	180 aa	43%		Bacteriophage replication gene A protein (GPA)
Phage_GPD	PF05954	12	117	296 aa	31%		Phage late control gene D protein (GPD)
Phage_GPL	PF05926	9	75	136 aa	42%		Phage head completion protein (GPL)
Phage_GPO	PF05929	5	78	258 aa	47%		Phage capsid scaffolding protein (GPO)
Phage_HK97_TLTM	PF06120	2	11	278 aa	74%		Tail length tape measure protein
Phage_holin	PF04688	11	56	45 aa	40%		Phage lysis protein, holin
Phage_holin_1	PF04531	8	81	79 aa	48%		Bacteriophage holin
Phage_holin_2	PF04550	2	12	91 aa	61%		Phage holin family 2
Phage_holin_3	PF05106	5	47	97 aa	38%		Phage holin family (Lysis protein S)
Phage_holin_4	PF05105	13	94	123 aa	29%		Holin family
Phage_holin_5	PF06946	2	8	92 aa	97%		Phage holin
Phage_H_T_join	PF05521	4	17	108 aa	37%		Phage head-tail joining protein
Phage_integrase	PF00589	35	5890	153 aa	20%	1crx	Phage integrase family
Phage_integr_N	PF02899	38	1600	82 aa	23%	3crx	Phage integrase, N-terminal SAM-like domain
Phage_integ_N	PF09003	10	42	76 aa	39%		Bacteriophage lambda integrase, N-terminal domain
Phage_Lacto_M3	PF07066	2	23	136 aa	47%		Lactococcus phage M3 protein
Phage_lambda_P	PF06992	2	41	213 aa	43%		Replication protein P
Phage_lambd_GpG	PF06894	7	28	135 aa	47%		Bacteriophage lambda minor tail protein (GpG)
Phage_lysis	PF03245	7	99	148 aa	49%		Bacteriophage lysis protein
Phage_lysozyme	PF00959	18	333	108 aa	25%	119l	Phage lysozyme
Phage_mat-A	PF03863	6	29	284 aa	38%		Phage maturation protein
Phage_min_cap	PF05126	4	20	449 aa	47%		Phage minor capsid protein
Phage_min_cap2	PF06152	5	29	293 aa	35%		Phage minor capsid protein 2
Phage_min_tail	PF05939	15	70	108 aa	36%		Phage minor tail protein
Phage_Mu_F	PF04233	13	186	113 aa	22%		Phage Mu protein F like protein
Phage_Mu_Gam	PF07352	4	18	161 aa	39%		Bacteriophage Mu Gam like protein
Phage_Mu_Gp45	PF06890	8	46	161 aa	31%		Bacteriophage Mu Gp45 protein
Phage_Mu_P	PF06893	7	44	309 aa	33%		Bacteriophage Mu P protein
Phage_NinH	PF06322	4	29	59 aa	70%		Phage NinH protein
Phage_Nu1	PF07471	11	39	141 aa	40%	1j9i	Phage DNA packaging protein Nu1
Phage_Orf51	PF06194	2	54	80 aa	90%		Phage Conserved Open Reading Frame 51
Phage_P2_GpE	PF06528	5	33	37 aa	52%		Phage P2 GpE
Phage_P2_GpU	PF06995	14	90	118 aa	35%		Phage P2 GpU
Phage_portal	PF04860	26	377	322 aa	19%		Phage portal protein
Phage_portal_2	PF05136	4	114	327 aa	28%		Phage portal protein, lambda family
Phage_pRha	PF09669	52	110	80 aa	35%		Phage regulatory protein Rha (Phage_pRha)
Phage_prot_Gp6	PF05133	5	101	438 aa	25%		Phage portal protein, SPP1 Gp6-like
Phage_QLRG	PF05135	9	48	93 aa	27%		Phage QLRG family, putative DNA packaging
Phage_rep_O	PF04492	7	57	223 aa	35%		Bacteriophage replication protein O
Phage_rep_org_N	PF09681	18	36	118 aa	34%		N-terminal phage replisome organiser (Phage_rep_org_N)
Phage_sheath_1	PF04984	11	212	356 aa	25%		Phage tail sheath protein
Phage_T4_gp19	PF06841	3	24	162 aa	46%		T4-like virus tail tube protein gp19
Phage_T4_Gp20	PF07230	5	330	204 aa	64%		Bacteriophage T4-like capsid assembly protein (Gp20)
Phage_T4_Gp30_7	PF06919	2	16	121 aa	98%		Phage Gp30.7 protein
Phage_T4_gp36	PF03903	3	22	117 aa	48%		Phage T4 tail fibre
Phage_T4_Ndd	PF06591	2	9	150 aa	89%		T4-like phage nuclear disruption protein (Ndd)
Phage_T7_Capsid	PF05396	2	14	117 aa	59%		Phage T7 capsid assembly protein
Phage_T7_tail	PF03906	2	44	218 aa	75%		Phage T7 tail fibre protein
Phage_TAC	PF06222	3	21	125 aa	55%		Phage tail assembly chaperone
Phage_tail	PF04630	7	34	196 aa	37%		Phage major tail protein
Phage_tail_2	PF06199	7	50	162 aa	30%		Phage major tail protein 2
Phage_tail_3	PF08813	12	24	162 aa	32%		Phage tail protein
Phage_tail_L	PF05100	8	80	202 aa	49%		Phage minor tail protein L
phage_tail_N	PF08400	9	76	128 aa	54%		Prophage tail fibre N-terminal
Phage_tail_S	PF05069	7	75	144 aa	30%		Phage virion morphogenesis family
Phage_tail_T	PF06223	5	30	99 aa	54%		Minor tail protein T
Phage_tail_U	PF06141	7	27	124 aa	62%		Phage minor tail protein U
Phage_tail_X	PF05489	32	111	59 aa	42%		Phage Tail Protein X
Phage_term_sma	PF07141	2	7	174 aa	98%		Putative bacteriophage terminase small subunit
Phage_term_smal	PF05944	8	75	130 aa	44%		Phage small terminase subunit
Phage_Treg	PF04761	2	17	56 aa	73%		Lactococcus bacteriophage putative transcription regulator
Phage_tube	PF04985	6	94	162 aa	36%		Phage tail tube protein FII
Phage_X	PF05155	9	24	91 aa	28%		Phage X family
Phage_XkdX	PF09693	18	67	39 aa	48%		Phage uncharacterised protein (Phage_XkdX)
PhaG_MnhG_YufB	PF03334	12	253	106 aa	31%		Na+/H+ antiporter subunit
PhaP_Bmeg	PF09602	3	13	164 aa	86%		Polyhydroxyalkanoic acid inclusion protein (PhaP_Bmeg)
Phasin	PF05597	8	65	125 aa	36%		Poly(hydroxyalcanoate) granule associated protein (phasin)
Phasin_2	PF09361	59	204	97 aa	21%		Phasin protein
PHAT	PF09246	2	5	108 aa	57%	1oxj	PHAT
PHA_gran_rgn	PF09650	17	34	87 aa	37%		Putative polyhydroxyalkanoic acid system protein (PHA_gran_rgn)
PHA_synth_III_E	PF09712	8	17	289 aa	32%		Poly(R)-hydroxyalkanoic acid synthase subunit (PHA_synth_III_E)
PHB_acc	PF05233	21	158	40 aa	36%		PHB accumulation regulatory domain
PHB_acc_N	PF07879	12	133	63 aa	56%		PHB/PHA accumulation regulator DNA-binding domain
PHB_depo_C	PF06850	12	155	197 aa	47%		PHB de-polymerase C-terminus
PHD	PF00628	98	2430	48 aa	29%	1f62	PHD-finger
PhdYeFM	PF02604	84	527	70 aa	19%		Phd_YefM
Phenol_Hydrox	PF02332	23	566	174 aa	35%	1mhy	Methane/Phenol/Toluene Hydroxylase
Phenol_hyd_sub	PF06099	8	37	58 aa	44%		Phenol hydroxylase subunit
Phenol_monoox	PF04663	7	38	66 aa	48%		Phenol hydroxylase conserved region
Phenyl_P_gamma	PF09662	2	2	84 aa	86%		Phenylphosphate carboxylase gamma subunit (Phenyl_P_gamma)
Pheromone	PF08015	38	71	54 aa	29%		Fungal mating-type pheromone
Phe_hydrox_dim	PF07976	13	100	163 aa	27%		Phenol hydroxylase, C-terminal dimerisation domain
Phe_tRNA-synt_N	PF02912	53	516	71 aa	34%	1eiy	Aminoacyl tRNA synthetase class II, N-terminal domain
Phe_ZIP	PF08916	5	22	59 aa	61%		Phenylalanine zipper
PHF5	PF03660	3	56	102 aa	65%		PHF5-like protein
Phge_rel_HI1409	PF09714	22	43	105 aa	28%		Phage-related protein (Phge_rel_HI1409)
Phg_2220_C	PF09524	29	56	74 aa	56%		Conserved phage C-terminus (Phg_2220_C)
Phi-29_GP16_7	PF06720	2	4	110 aa	73%		Bacteriophage phi-29 early protein GP16.7
Phi-29_GP3	PF05435	3	6	224 aa	64%		Phi-29 DNA terminal protein GP3
Phi-29_GP4	PF05464	3	5	125 aa	66%		Phi-29-like late genes activator (early protein GP4)
Phi_1	PF04674	8	41	243 aa	45%		Phosphate-induced protein 1 conserved region
PHK_AB	PF05682	6	83	794 aa	40%		Phosphorylase kinase alpha/beta
Phlebovirus_G1	PF07243	3	62	158 aa	46%		Phlebovirus glycoprotein G1
Phlebovirus_G2	PF07245	3	27	169 aa	52%		Phlebovirus glycoprotein G2
Phlebovirus_N	PF06606	5	46	141 aa	54%		Phlebovirus nucleocapsid (N) protein
Phlebovirus_NSM	PF07246	3	5	226 aa	40%		Phlebovirus nonstructural protein NS-M
PhnA	PF03831	12	293	55 aa	59%		PhnA protein
PhnA_Zn_Ribbon	PF08274	34	257	32 aa	51%		PhnA Zinc-Ribbon
PhnG	PF06754	10	66	150 aa	46%		Phosphonate metabolism protein PhnG
PhnH	PF05845	10	87	183 aa	36%		Bacterial phosphonate metabolism protein (PhnH)
PhnI	PF05861	8	87	354 aa	56%		Bacterial phosphonate metabolism protein (PhnI)
PhnJ	PF06007	7	88	271 aa	66%		Phosphonate metabolism protein PhnJ
PHO4	PF01384	27	659	383 aa	28%		Phosphate transporter family
PhoD	PF09423	8	245	399 aa	27%		PhoD-like phosphatase
PhoH	PF02562	6	730	205 aa	47%		PhoH-like protein
PhoQ_Sensor	PF08918	7	31	173 aa	66%		PhoQ Sensor
Phosducin	PF02114	2	121	220 aa	27%	1b9y	Phosducin
Phosphodiest	PF01663	71	582	322 aa	19%	1ei6	Type I phosphodiesterase / nucleotide pyrophosphatase
Phosphoesterase	PF04185	20	375	360 aa	26%		Phosphoesterase family
Phospholamban	PF04272	2	9	52 aa	88%	1fjk	Phospholamban
Phospholip_A2_1	PF00068	37	676	115 aa	45%	1bbc	Phospholipase A2
Phospholip_A2_2	PF05826	7	52	93 aa	42%	1poc	Phospholipase A2
Phospholip_A2_3	PF09056	11	22	107 aa	42%		Prokaryotic phospholipase A2
Phospholip_B	PF04916	7	80	513 aa	33%		Phospholipase B
Phosphoprotein	PF00922	7	82	202 aa	54%		Vesiculovirus phosphoprotein
Phosphorylase	PF00343	9	616	635 aa	39%	1abb	Carbohydrate phosphorylase
Phos_pyr_kin	PF08543	134	767	232 aa	34%	1jxi	Phosphomethylpyrimidine kinase
Photo_RC	PF00124	13	2035	251 aa	47%	1prc	Photosynthetic reaction centre protein
PhoU	PF01895	66	1309	86 aa	25%		PhoU family
PhoU_div	PF01865	9	249	209 aa	24%		Protein of unknown function DUF47
PHP	PF02811	70	2060	195 aa	20%	1m65	PHP domain
PHR	PF08005	10	83	148 aa	44%		PHR domain
Phycobilisome	PF00502	22	1468	102 aa	35%	1cpc	Phycobilisome protein
Phycoerythr_ab	PF02972	3	12	55 aa	58%	1qgw	Phycoerythrin, alpha/beta chain
PhyH	PF05721	39	553	209 aa	17%		Phytanoyl-CoA dioxygenase (PhyH)
Phytase	PF02333	2	66	300 aa	40%	1qlg	Phytase
Phytochelatin	PF05023	4	61	124 aa	54%		Phytochelatin synthase
Phytochel_synth	PF04833	8	68	167 aa	54%		Phytochelatin synthetase-like conserved region
Phytochrome	PF00360	9	1252	139 aa	66%		Phytochrome region
Phytoreo_P8	PF07124	3	13	424 aa	70%		Phytoreovirus outer capsid protein P8
Phytoreo_Pns	PF05451	3	6	349 aa	50%		Phytoreovirus nonstructural protein Pns10/11
Phytoreo_S7	PF07236	2	7	506 aa	56%		Phytoreovirus S7 protein
Phyto_Pns9_10	PF05878	3	11	307 aa	46%		Phytoreovirus nonstructural protein Pns9/Pns10
PHZA_PHZB	PF03284	3	25	161 aa	66%		Phenazine biosynthesis protein A/B
PhzC-PhzF	PF02567	16	465	269 aa	26%	1sdj	Phenazine biosynthesis-like protein
PH_2	PF08458	9	38	108 aa	41%		Plant pleckstrin homology-like region
PI-PLC-X	PF00388	13	540	133 aa	37%	1gym	Phosphatidylinositol-specific phospholipase C, X domain
PI-PLC-Y	PF00387	8	387	106 aa	42%	1qas	Phosphatidylinositol-specific phospholipase C, Y domain
PI31_Prot_Reg	PF08577	18	44	64 aa	40%		PI31 proteasome regulator
PI3Ka	PF00613	16	252	187 aa	27%	1qmm	Phosphoinositide 3-kinase family, accessory domain (PIK domain)
PI3K_C2	PF00792	25	177	130 aa	23%	1qmm	Phosphoinositide 3-kinase C2
PI3K_p85B	PF02192	4	51	75 aa	55%		PI3-kinase family, p85-binding domain
PI3K_rbd	PF00794	12	107	96 aa	26%	1qmm	PI3-kinase family, ras-binding domain
PI3_PI4_kinase	PF00454	44	845	219 aa	23%	1qmm	Phosphatidylinositol 3- and 4-kinase
Picorna_P3A	PF06363	4	13	100 aa	62%		Picornaviridae P3A protein
Pico_P1A	PF02226	9	2220	67 aa	65%	1aym	Picornavirus coat protein (VP4)
Pico_P2A	PF00947	9	905	92 aa	65%	2hrv	Picornavirus core protein 2A
Pico_P2B	PF01552	10	485	98 aa	68%		Picornavirus 2B protein
PID	PF00640	25	495	124 aa	21%	1shc	Phosphotyrosine interaction domain (PTB/PID)
PIG-F	PF06699	4	49	187 aa	29%		GPI biosynthesis protein family Pig-F
PIG-L	PF02585	94	585	135 aa	24%	1uan	GlcNAc-PI de-N-acetylase
PIG-P	PF08510	20	53	125 aa	30%		PIG-P
PIG-U	PF06728	5	55	172 aa	39%		GPI transamidase subunit PIG-U
PIG-X	PF08320	11	28	189 aa	29%		PIG-X / PBN1
PIGA	PF08288	13	63	88 aa	55%		PIGA (GPI anchor biosynthesis)
Pigment_DH	PF06324	6	22	18 aa	79%		Pigment-dispersing hormone (PDH)
PigN	PF04987	6	49	396 aa	27%		Phosphatidylinositolglycan class N (PIG-N)
PIH1	PF08190	15	52	260 aa	26%		pre-RNA processing PIH1/Nop17
Pilin	PF00114	23	297	112 aa	26%	1paj	Pilin (bacterial filament)
Pili_assembly_C	PF02753	19	426	77 aa	25%	3dpa	Gram-negative pili assembly chaperone, C-terminal domain
Pili_assembly_N	PF00345	20	466	120 aa	35%	3dpa	Gram-negative pili assembly chaperone, N-terminal domain
PilM	PF07419	4	28	127 aa	34%		PilM
PilN	PF05137	11	313	160 aa	19%		Fimbrial assembly protein (PilN)
PilO	PF04350	3	120	144 aa	37%		Pilus assembly protein, PilO
PilP	PF04351	3	116	138 aa	33%		Pilus assembly protein, PilP
PilS	PF08805	18	42	136 aa	32%	1q5f	PilS N terminal
Pilus_CpaD	PF09476	28	44	173 aa	32%		Pilus biogenesis CpaD protein (pilus_cpaD)
PilZ	PF07238	192	1121	101 aa	16%		PilZ domain
PIN	PF01850	146	1410	123 aa	17%	1o4w	PIN domain
Pinin_SDK_memA	PF04696	2	41	127 aa	43%		pinin/SDK/memA/ protein conserved region
Pinin_SDK_N	PF04697	3	20	129 aa	82%		pinin/SDK conserved region
PIP5K	PF01504	16	323	262 aa	29%	1bo1	Phosphatidylinositol-4-phosphate 5-Kinase
PipA	PF07108	2	12	208 aa	84%		PipA protein
PIR	PF00399	17	170	17 aa	60%		Yeast PIR protein repeat
Pirin	PF02678	52	790	108 aa	36%	1j1l	Pirin
Pirin_C	PF05726	38	488	103 aa	28%	1j1l	Pirin C-terminal cupin domain
Piwi	PF02171	22	364	292 aa	30%		Piwi domain
PK	PF00224	13	1025	321 aa	42%	1pkn	Pyruvate kinase, barrel domain
PKD	PF00801	103	1594	73 aa	29%	1b4r	PKD domain
PKD_channel	PF08016	13	92	346 aa	29%		Polycystin cation channel
PKI	PF02827	4	37	67 aa	47%	2cpk	cAMP-dependent protein kinase inhibitor
pKID	PF02173	11	112	40 aa	54%	1kdx	pKID domain
Pkinase	PF00069	54	25281	224 aa	24%	1apm	Protein kinase domain
Pkinase_C	PF00433	170	966	47 aa	27%	1apk	Protein kinase C terminal domain
Pkinase_Tyr	PF07714	152	4606	180 aa	29%	1apm	Protein tyrosine kinase
PkinA_anch	PF03832	8	56	31 aa	41%		Protein kinase A anchor
Pkip-1	PF06878	9	29	161 aa	34%		Pkip-1 protein
Pkr1	PF08636	10	24	71 aa	48%		ER protein Pkr1
PK_C	PF02887	13	880	111 aa	30%	1pkn	Pyruvate kinase, alpha/beta domain
PLA1	PF02253	4	134	259 aa	36%	1qd6	Phospholipase A1
PLA2G12	PF06951	2	27	157 aa	50%		Group XII secretory phospholipase A2 precursor (PLA2G12)
PLA2_B	PF01735	16	160	399 aa	30%	1rlw	Lysophospholipase catalytic domain
PLA2_inh	PF02988	5	79	81 aa	49%		Phospholipase A2 inhibitor
PLAC	PF08686	23	101	34 aa	37%		PLAC (protease and lacunin) domain
PLAC8	PF04749	40	193	102 aa	26%		PLAC8 family
Planc_extracel	PF07595	33	35	28 aa	32%		Planctomycete extracellular
Plant_NMP1	PF06694	2	13	225 aa	68%		Plant nuclear matrix protein 1 (NMP1)
Plant_tran	PF04827	8	108	100 aa	53%		Plant transposon protein
Plant_vir_prot	PF01307	28	218	102 aa	32%		Plant viral movement protein
Plasmid_killer	PF05015	8	185	83 aa	38%		Plasmid maintenance system killer protein
Plasmid_parti	PF01672	20	72	79 aa	43%		Putative plasmid partition protein
Plasmid_RAQPRD	PF09686	15	51	79 aa	42%		Plasmid protein of unknown function (Plasmid_RAQPRD)
Plasmid_stabil	PF05016	161	902	84 aa	17%		Plasmid stabilisation system protein
Plasmid_Txe	PF06769	13	139	76 aa	48%		Plasmid encoded toxin Txe
Plasmodium_HRP	PF05403	2	97	187 aa	71%		Plasmodium histidine-rich protein (HRPII/III)
Plasmodium_Vir	PF05795	11	81	250 aa	25%		Plasmodium vivax Vir protein
Plasmod_dom_1	PF09715	6	9	69 aa	42%		Plasmodium protein of unknown function (Plasmod_dom_1)
Plasmod_MYXSPDY	PF07981	37	75	16 aa	78%		Plasmodium repeat_MYXSPDY
Plasmod_Pvs28	PF06247	5	78	213 aa	49%		Plasmodium ookinete surface protein Pvs28
PLAT	PF01477	71	480	108 aa	18%	1lpa	PLAT/LH2 domain
PLATZ	PF04640	13	47	112 aa	54%		PLATZ transcription factor
PLC-beta_C	PF08703	6	31	171 aa	46%	1jad	PLC-beta C terminal
PLDc	PF00614	48	2898	28 aa	30%	1byr	Phospholipase D Active site motif
PLD_envelope	PF08371	18	204	153 aa	39%		Phospholipase D/viral envelope
Plectin	PF00681	40	789	43 aa	34%	1lm7	Plectin repeat
Plexin_cytopl	PF08337	12	98	411 aa	50%		Plexin cytoplasmic region
PLRV_ORF5	PF01690	6	127	420 aa	38%		Potato leaf roll virus readthrough protein
PLU-1	PF08429	16	97	297 aa	35%		PLU-1-like protein
Plug	PF07715	747	5432	108 aa	21%	1fi1	TonB-dependent Receptor Plug Domain
Plus-3	PF03126	14	67	105 aa	28%		Plus-3 domain
PmbA_TldD	PF01523	24	858	291 aa	23%		Putative modulator of DNA gyrase
PMBR	PF09373	49	65	32 aa	22%		Pseudomurein-binding repeat
PMC2NT	PF08066	14	53	90 aa	31%		PMC2NT (NUC016) domain
PMEI	PF04043	125	360	149 aa	19%	1rj1	Plant invertase/pectin methylesterase inhibitor
PMG	PF05287	4	34	168 aa	42%		PMG protein
PMI_typeI	PF01238	8	369	319 aa	26%	1pmi	Phosphomannose isomerase type I
PMM	PF03332	9	98	203 aa	52%		Eukaryotic phosphomannomutase
PMP1_2	PF08114	2	2	41 aa	98%		ATPase proteolipid family
PMP22_Claudin	PF00822	13	481	164 aa	28%		PMP-22/EMP/MP20/Claudin family
PMSR	PF01625	17	931	154 aa	40%	1fva	Peptide methionine sulfoxide reductase
PMT	PF02366	24	662	230 aa	18%		Dolichyl-phosphate-mannose-protein mannosyltransferase
Pneumovirus_M2	PF06436	4	43	156 aa	59%		Pneumovirus matrix protein 2 (M2)
Pneumo_att_G	PF05539	3	22	247 aa	58%		Pneumovirinae attachment membrane glycoprotein G
Pneumo_M2	PF07380	3	8	89 aa	57%		Pneumovirus M2 protein
Pneumo_matrix	PF03393	9	85	178 aa	67%		Pneumovirus matrix protein
Pneumo_ncap	PF03246	4	426	135 aa	52%		Pneumovirus nucleocapsid protein
Pneumo_NS1	PF03438	2	17	136 aa	80%		Pneumovirus NS1 protein
Pneumo_phosprot	PF02478	2	719	90 aa	86%		Pneumovirus phosphoprotein
PngaseF_C	PF09113	2	3	171 aa	71%	1pgs	Peptide-N-glycosidase F, C terminal
PngaseF_N	PF09112	2	3	136 aa	69%	1pgs	Peptide-N-glycosidase F, N terminal
PNK3P	PF08645	35	199	150 aa	28%		Polynucleotide kinase 3 phosphatase
PNPase	PF03726	23	567	82 aa	28%	1e3p	Polyribonucleotide nucleotidyltransferase, RNA binding domain
PNP_UDP_1	PF01048	16	1087	221 aa	23%	1ecp	Phosphorylase family
PNTB	PF02233	10	412	418 aa	49%	1d4o	NAD(P) transhydrogenase beta subunit
Podoplanin	PF05808	4	8	167 aa	57%		Podoplanin
Podovirus_Gp16	PF05894	3	6	287 aa	51%		Podovirus DNA encapsidation protein (Gp16)
PolC_DP2	PF03833	6	31	891 aa	47%		DNA polymerase II large subunit DP2
Pollen_allerg_1	PF01357	53	499	75 aa	43%	1who	Pollen allergen
Pollen_allerg_2	PF01620	7	45	131 aa	59%	1nlx	Ribonuclease (pollen allergen)
Pollen_Ole_e_I	PF01190	9	115	121 aa	30%		Pollen proteins Ole e I family
POLO_box	PF00659	13	193	64 aa	28%	1q4k	POLO box duplicated region
PolyA_pol	PF01743	21	930	124 aa	34%	1ou5	Poly A polymerase head domain
PolyG_pol	PF01518	4	43	365 aa	56%		Sigma NS protein
Polyhedrin	PF00738	17	214	197 aa	72%		Polyhedrin
Polyketide_cyc	PF03364	101	908	120 aa	16%		Polyketide cyclase / dehydrase and lipid transport
Polyoma_agno	PF01736	3	116	57 aa	83%		Polyomavirus agnoprotein
Polyoma_coat	PF00718	8	1839	110 aa	63%	1sva	Polyomavirus coat protein
Polyoma_coat2	PF00761	8	264	249 aa	65%	1cn3	Polyomavirus coat protein
Polyoma_lg_T_C	PF06431	3	1536	96 aa	85%	1n25	Polyomavirus large T antigen C-terminus
polyprenyl_synt	PF00348	16	1834	249 aa	27%	1fps	Polyprenyl synthetase
Polysacc_deac_1	PF01522	106	1950	122 aa	21%	1ny1	Polysaccharide deacetylase
Polysacc_deac_2	PF04748	9	164	206 aa	33%		Divergent polysaccharide deacetylase
Polysacc_synt	PF01943	31	1485	275 aa	14%		Polysaccharide biosynthesis protein
Polysacc_synt_2	PF02719	79	536	281 aa	43%		Polysaccharide biosynthesis protein
Polysacc_syn_2C	PF08485	20	80	48 aa	55%		Polysaccharide biosynthesis protein C-terminal
Poly_export	PF02563	19	697	116 aa	28%		Polysaccharide biosynthesis/export protein
Pol_alpha_B_N	PF08418	10	45	230 aa	27%		DNA polymerase alpha subunit B N-terminal
Pombe_5TM	PF09437	2	6	198 aa	54%		Pombe specific 5TM protein
Ponericin	PF07442	3	5	29 aa	70%		Ponericin
POP1	PF06978	5	51	167 aa	32%		Ribonucleases P/MRP protein subunit POP1
Popeye	PF04831	2	43	146 aa	51%		Popeye protein conserved region
POPLD	PF08170	10	45	95 aa	31%		POPLD (NUC188) domain
POR	PF01558	33	834	174 aa	22%	2pda	Pyruvate ferredoxin/flavodoxin oxidoreductase
Porin_1	PF00267	18	2347	309 aa	26%	1mpf	Gram-negative porin
Porin_2	PF02530	16	243	308 aa	26%		Porin subfamily
Porin_3	PF01459	19	259	252 aa	24%		Eukaryotic porin
Porin_OmpG	PF09381	4	7	301 aa	91%		Outer membrane protein G (OmpG)
Porin_O_P	PF07396	14	154	350 aa	19%		Phosphate-selective porin O and P
Porphobil_deam	PF01379	21	626	208 aa	46%	1pda	Porphobilinogen deaminase, dipyromethane cofactor binding domain
Porphobil_deamC	PF03900	21	585	76 aa	34%	1pda	Porphobilinogen deaminase, C-terminal domain
Porph_ging	PF09697	6	14	65 aa	43%		Protein of unknown function (Porph_ging)
POR_N	PF01855	32	804	197 aa	31%	2pda	Pyruvate flavodoxin/ferredoxin oxidoreductase, thiamine diP-binding domain
Potass_KdpF	PF09604	30	75	25 aa	40%		F subunit of K+-transporting ATPase (Potass_KdpF)
potato_inhibit	PF00280	13	126	60 aa	44%	1tin	Potato inhibitor I family
Potex_coat	PF06184	2	45	148 aa	92%		Potexvirus coat protein
POTRA_1	PF08478	93	468	69 aa	22%		POTRA domain, FtsQ-type
POTRA_2	PF08479	60	338	76 aa	24%		POTRA domain, ShlB-type
Poty_coat	PF00767	33	3106	209 aa	57%		Potyvirus coat protein
Poty_PP	PF08440	37	605	200 aa	51%		Potyviridae polyprotein
Pou	PF00157	10	336	69 aa	66%	1oct	Pou domain - N-terminal to homeobox domain
POX	PF07526	27	78	131 aa	39%		Associated with HOX
Poxvirus_B22R	PF04395	7	78	945 aa	39%		Poxvirus B22R protein
Pox_A11	PF05061	4	41	299 aa	61%		Poxvirus A11 Protein
Pox_A12	PF04651	5	43	188 aa	60%		Poxvirus A12 protein
Pox_A14	PF05767	5	37	90 aa	58%		Poxvirus virion envelope protein A14
Pox_A21	PF05323	6	39	112 aa	63%		Poxvirus A21 Protein
Pox_A22	PF04848	7	40	144 aa	65%		Poxvirus A22 protein
Pox_A28	PF04584	8	49	137 aa	54%		Poxvirus A28 family
Pox_A30L_A26L	PF06086	3	41	211 aa	81%		Orthopoxvirus A26L/A30L protein
Pox_A31	PF05771	3	42	126 aa	70%		Poxvirus A31 protein
Pox_A32	PF04665	6	52	229 aa	64%		Poxvirus A32 protein
Pox_A3L	PF05288	5	38	70 aa	59%		Poxvirus A3L Protein
Pox_A46	PF06225	18	175	135 aa	27%		Poxvirus A4/B15 family
Pox_A51	PF04948	4	39	288 aa	56%		Poxvirus A51 protein
Pox_A6	PF04924	5	42	370 aa	62%		Poxvirus A6 protein
Pox_A8	PF04745	5	46	258 aa	59%		VITF-3 subunit protein
Pox_A9	PF04835	5	42	53 aa	65%		A9 protein conserved region
Pox_Ag35	PF03286	3	48	210 aa	58%		Pox virus Ag35 surface protein
Pox_A_type_inc	PF04508	27	337	23 aa	37%		Viral A-type inclusion protein repeat
Pox_C4_C10	PF03336	5	75	258 aa	48%		Poxvirus C4/C10 protein
Pox_C7_F8A	PF03287	10	44	149 aa	44%		Poxvirus C7/F8A protein
Pox_D2	PF04701	5	38	133 aa	48%		Pox virus D2 protein
Pox_D3	PF04580	5	40	232 aa	49%		Chordopoxvirinae D3 protein
Pox_D5	PF03288	15	124	88 aa	22%	1ka8	Poxvirus D5 protein-like
Pox_E10	PF04805	6	42	69 aa	72%		E10-like protein conserved region
Pox_E2	PF04497	5	54	700 aa	56%		Poxvirus E2 protein
Pox_E5R	PF03111	3	46	287 aa	64%		E5R poxvirus protein family
Pox_E6	PF04656	5	50	545 aa	68%		Pox virus E6 protein
Pox_E8	PF03394	10	43	235 aa	74%		Poxvirus E8 protein
Pox_F11	PF04943	4	41	326 aa	55%		Poxvirus F11 protein
Pox_F12L	PF03337	5	61	609 aa	53%	1mg2	Poxvirus F12L protein
Pox_F15	PF04596	5	40	136 aa	66%		Poxvirus protein F15
Pox_F16	PF04708	4	39	224 aa	64%		Poxvirus F16 protein
Pox_F17	PF04767	5	41	94 aa	63%		DNA-binding 11 kDa phosphoprotein
Pox_G5	PF04599	7	51	381 aa	47%		Poxvirus G5 protein
Pox_G7	PF05503	6	42	359 aa	58%		Poxvirus G7-like
Pox_H7	PF04787	5	41	142 aa	59%		Late protein H7
Pox_I1	PF03289	4	52	301 aa	74%		Poxvirus protein I1
Pox_I3	PF04661	6	44	257 aa	56%		Poxvirus I3 ssDNA-binding protein
Pox_I5	PF04713	6	38	76 aa	47%		Poxvirus protein I5
Pox_I6	PF04595	10	79	310 aa	41%		Poxvirus I6-like family
Pox_IFNR	PF04903	2	45	263 aa	72%		Poxvirus interferon gamma receptor
Pox_int_trans	PF05718	6	42	374 aa	66%		Poxvirus intermediate transcription factor
Pox_J1	PF03338	5	51	142 aa	58%		Poxvirus J1 protein
Pox_L3_FP4	PF03339	5	48	312 aa	56%		Poxvirus L3/FP4 protein
Pox_L5	PF04872	5	45	77 aa	53%		Poxvirus L5 protein family
Pox_LP_H2	PF03356	5	59	182 aa	60%		Viral late protein H2
Pox_M2	PF04887	3	33	194 aa	80%		Poxvirus M2 protein
Pox_MCEL	PF03291	11	121	382 aa	31%		mRNA capping enzyme
Pox_mRNA-cap	PF03341	5	41	276 aa	70%		Poxvirus mRNA capping enzyme, small subunit
Pox_N2L	PF05747	3	45	167 aa	55%		Poxvirus N2L protein
Pox_O1	PF04638	5	56	584 aa	57%		Pox virus protein O1
Pox_P21	PF05313	6	41	189 aa	56%		Poxvirus P21 membrane protein
Pox_P35	PF03213	5	80	281 aa	45%		Poxvirus P35 protein
Pox_P4A	PF03395	4	59	801 aa	62%		Poxvirus P4A protein
Pox_P4B	PF03292	5	142	313 aa	45%		Poxvirus P4B major core protein
Pox_polyA_pol	PF03296	3	53	448 aa	63%		Poxvirus poly(A) polymerase catalytic subunit
Pox_Rap94	PF03294	5	69	603 aa	66%		RNA polymerase-associated transcription specificity factor, Rap94
Pox_Rif	PF03340	7	49	517 aa	67%		Poxvirus rifampicin resistance protein
Pox_RNA_pol	PF03293	4	39	160 aa	71%		Poxvirus DNA-directed RNA polymerase, 18 kD subunit
Pox_RNA_Pol_19	PF05320	6	38	165 aa	64%		Poxvirus DNA-directed RNA polymerase 19 kDa subunit
Pox_RNA_Pol_22	PF05273	5	39	180 aa	68%		Poxvirus RNA polymerase 22 kDa subunit
Pox_RNA_pol_35	PF03396	9	56	275 aa	61%		Poxvirus DNA-directed RNA polymerase, 35 kD subunit
Pox_ser-thr_kin	PF05445	9	57	429 aa	69%		Poxvirus serine/threonine protein kinase
Pox_T4_C	PF04490	4	21	143 aa	40%		Poxvirus T4 protein, C terminus
Pox_T4_N	PF04491	3	29	45 aa	58%		Poxvirus T4 protein, N terminus
Pox_TAA1	PF03295	4	39	108 aa	67%		Poxvirus trans-activator protein A1
Pox_TAP	PF03355	3	36	257 aa	81%		Viral Trans-Activator Protein
Pox_VERT_large	PF04441	7	44	692 aa	69%		Poxvirus early transcription factor (VETF), large subunit
Pox_vIL-18BP	PF05566	2	26	120 aa	89%		Orthopoxvirus interleukin 18 binding protein
Pox_VLTF3	PF04947	18	63	165 aa	43%		Poxvirus Late Transcription Factor VLTF3 like
Pox_VP8_L4R	PF04498	5	41	215 aa	63%		Poxvirus nucleic acid binding protein VP8 / L4R
PP-binding	PF00550	71	7380	64 aa	25%	1acp	Phosphopantetheine attachment site
PP1	PF07430	3	7	171 aa	72%		Phloem filament protein PP1
PP1_inhibitor	PF05361	4	41	122 aa	47%	1k5o	PKC-activated protein phosphatase-1 inhibitor
PP2C	PF00481	32	1561	255 aa	22%	1a6q	Protein phosphatase 2C
PP2C_C	PF07830	6	63	73 aa	58%	1a6q	Protein serine/threonine phosphatase 2C, C-terminal domain
PPAK	PF02818	31	178	27 aa	61%		PPAK motif
PPC	PF04151	151	620	71 aa	19%	1nqd	Bacterial pre-peptidase C-terminal domain
PPDK_N	PF01326	93	807	318 aa	29%	1dik	Pyruvate phosphate dikinase, PEP/pyruvate binding domain
PPE	PF00823	8	431	156 aa	46%		PPE family
PPI_Ypi1	PF07491	10	60	56 aa	45%		Protein phosphatase inhibitor
PPK2	PF03976	10	458	226 aa	38%		Polyphosphate kinase 2
PPM_N	PF08342	33	257	95 aa	46%		Phosphopentomutase N-terminal
PPP4R2	PF09184	9	41	206 aa	41%		PPP4R2
PPP5	PF08321	11	92	91 aa	31%		PPP5
PPR	PF01535	558	15487	34 aa	19%		PPR repeat
PPTA	PF01239	143	758	30 aa	24%	1ft1	Protein prenyltransferase alpha subunit repeat
PPV_E1_C	PF00519	27	207	354 aa	52%	1f08	Papillomavirus helicase
PPV_E1_N	PF00524	26	166	125 aa	38%		E1 Protein, N terminal domain
PPV_E2_C	PF00511	23	189	76 aa	41%	2bop	E2 (early) protein, C terminal
PPV_E2_N	PF00508	24	184	194 aa	44%	2bop	E2 (early) protein, N terminal
Ppx-GppA	PF02541	10	645	285 aa	26%		Ppx/GppA phosphatase family
PP_kinase	PF02503	8	528	586 aa	40%		Polyphosphate kinase
PP_M1	PF03012	8	461	203 aa	71%		Phosphoprotein
PQ-loop	PF04193	32	603	62 aa	21%		PQ loop repeat
PqiA	PF04403	12	400	196 aa	26%		Paraquat-inducible protein A
PQQ	PF01011	131	2493	37 aa	23%	4aah	PQQ enzyme repeat
PqqA	PF08042	11	36	20 aa	56%		PqqA family
PqqD	PF05402	8	89	79 aa	33%		Coenzyme PQQ synthesis protein D (PqqD)
PRA-CH	PF01502	18	530	75 aa	49%		Phosphoribosyl-AMP cyclohydrolase
PRA-PH	PF01503	17	506	88 aa	39%		Phosphoribosyl-ATP pyrophosphohydrolase
PRA1	PF03208	20	132	144 aa	24%		PRA1 family protein
PRAI	PF00697	23	608	193 aa	31%	1pii	N-(5'phosphoribosyl)anthranilate (PRA) isomerase
PRANC	PF09372	77	269	93 aa	23%		PRANC domain
PRC	PF05239	120	1076	77 aa	20%	1yst	PRC-barrel domain
PRCH	PF03967	3	32	131 aa	46%	1yst	Photosynthetic reaction centre, H-chain N-terminal region
PRD	PF00874	231	1116	90 aa	20%	1h99	PRD domain
Prd1-P2	PF09214	2	7	555 aa	90%	1n7v	Bacteriophage Prd1, adsorption protein P2
PRD_Mga	PF08270	13	115	198 aa	29%		M protein trans-acting positive regulator (MGA) PRD domain
Pre-SET	PF05033	23	199	103 aa	30%	1ml9	Pre-SET motif
Prefoldin	PF02996	37	255	113 aa	18%	1fxk	Prefoldin subunit
Prefoldin_2	PF01920	58	296	100 aa	19%	1fxk	Prefoldin subunit
PRELI	PF04707	16	150	153 aa	29%		PRELI-like family
Prenylcys_lyase	PF07156	5	35	344 aa	45%		Prenylcysteine lyase
Prenyltrans	PF00432	69	2229	42 aa	23%	1sqc	Prenyltransferase and squalene oxidase repeat
Prenyltransf	PF01255	9	773	216 aa	40%	1jp3	Putative undecaprenyl diphosphate synthase
Presenilin	PF01080	6	85	331 aa	50%		Presenilin
Preseq_ALAS	PF09029	3	21	92 aa	63%		5-aminolevulinate synthase presequence
PRE_C2HC	PF07530	11	24	64 aa	34%		Associated with zinc fingers
PRF	PF06875	2	211	213 aa	74%		Plethodontid receptivity factor PRF
PrgH	PF09480	8	29	326 aa	30%		Type III secretion system protein PrgH-EprH (PrgH)
PrgU	PF09627	2	6	111 aa	69%		PrgU-like protein
PRiA4_ORF3	PF07929	18	105	160 aa	31%		Plasmid pRiA4b ORF-3-like protein
Pribosyltran	PF00156	126	5606	123 aa	20%	1sto	Phosphoribosyl transferase domain
priB_priC	PF07445	5	41	170 aa	42%		Primosomal replication protein priB and priC
PriCT_1	PF08708	69	224	73 aa	23%		Primase C terminal 1 (PriCT-1)
PriCT_2	PF08707	31	77	75 aa	29%		Primase C terminal 2 (PriCT-2)
Prim-Pol	PF09250	48	135	171 aa	21%	1ro2	Bifunctional DNA primase/polymerase, N-terminal
Prim_Zn_Ribbon	PF08273	18	73	37 aa	44%		Zinc-binding domain of primase-helicase
Prion	PF00377	7	424	108 aa	77%	2prp	Prion/Doppel alpha-helical domain
Prion_octapep	PF03991	5	1808	7 aa	98%	1oei	Copper binding octapeptide repeat
Prismane	PF03063	32	308	530 aa	31%	1e1d	Prismane/CO dehydrogenase family
PRK	PF00485	12	1228	140 aa	32%	1a7j	Phosphoribulokinase / Uridine kinase family
PrkA	PF06798	7	182	251 aa	48%		PrkA serine protein kinase C-terminal domain
PRKCSH	PF07915	26	122	67 aa	27%		Glucosidase II beta subunit-like protein
PrmA	PF06325	31	593	233 aa	34%	1ufk	Ribosomal protein L11 methyltransferase (PrmA)
PRMT5	PF05185	7	64	444 aa	41%		PRMT5 arginine-N-methyltransferase
Pro-kuma_activ	PF09286	64	189	138 aa	22%	1t1e	Pro-kumamolisin, activation domain
Pro-MCH	PF05824	4	18	76 aa	83%		Pro-melanin-concentrating hormone (Pro-MCH)
Pro-NT_NN	PF07421	3	10	156 aa	83%		Neurotensin/neuromedin N precursor
PRO8NT	PF08082	15	65	148 aa	66%		PRO8NT (NUC069) domain
PROCN	PF08083	12	74	368 aa	68%		PROCN (NUC071) domain
PROCT	PF08084	19	67	122 aa	43%		PROCT (NUC072) domain
Profilin	PF00235	16	270	123 aa	41%	2acg	Profilin
Prog_receptor	PF02161	3	40	261 aa	52%		Progesterone receptor
Prok-TraM	PF09228	3	7	88 aa	57%	1us6	Prokaryotic Transcriptional repressor TraM
Prokineticin	PF06607	2	38	94 aa	59%	1imt	Prokineticin
Prominin	PF05478	7	60	592 aa	35%		Prominin
PRONE	PF03759	4	46	382 aa	49%		PRONE (Plant-specific Rop nucleotide exchanger)
Propeptide_C1	PF08127	56	142	42 aa	36%		Peptidase family C1 propeptide
Propeptide_C25	PF08126	2	10	189 aa	68%		Propeptide_C25
Propep_M14	PF02244	10	160	74 aa	24%	1pba	Carboxypeptidase activation peptide
ProQ	PF04352	4	115	150 aa	37%		ProQ activator of osmoprotectant transporter ProP
ProRS-C_1	PF09180	88	206	74 aa	30%	1nj1	Prolyl-tRNA synthetase, C-terminal
ProRS-C_2	PF09181	2	3	65 aa	62%	1nj8	Prolyl-tRNA synthetase, C-terminal
ProSAAS	PF07259	2	5	188 aa	83%		ProSAAS precursor
Prosystemin	PF07376	2	8	197 aa	83%		Prosystemin
Protamine_3	PF08188	2	5	35 aa	58%		Spermatozal protamine family
Protamine_P1	PF00260	19	141	55 aa	68%		Protamine P1
Protamine_P2	PF00841	5	23	94 aa	73%		Sperm histone P2
Proteasome	PF00227	175	2069	176 aa	21%	1pma	Proteasome A-type and B-type
Prothymosin	PF03247	2	46	104 aa	70%		Prothymosin/parathymosin family
Protocadherin	PF08374	4	63	191 aa	48%		Protocadherin
Prot_inhib_II	PF02428	10	285	48 aa	69%	1ce3	Potato type II proteinase inhibitor family
Prox1	PF05044	5	53	363 aa	41%	1mij	Homeobox prospero-like protein (PROX1)
Pro_3_hydrox_C	PF05373	4	5	91 aa	37%	1e5r	L-proline 3-hydroxylase, C-terminal
Pro_Al_protease	PF02983	20	48	59 aa	29%	2pro	Alpha-lytic protease prodomain
Pro_CA	PF00484	12	824	161 aa	28%	1ddz	Carbonic anhydrase
Pro_dh	PF01619	15	465	330 aa	30%	1k87	Proline dehydrogenase
Pro_isomerase	PF00160	21	2139	157 aa	36%	1cyh	Cyclophilin type peptidyl-prolyl cis-trans isomerase/CLD
Pro_racemase	PF05544	14	184	305 aa	36%		Proline racemase
Prp18	PF02840	6	67	133 aa	43%	1dvk	Prp18 domain
Prp19	PF08606	21	76	69 aa	53%		Prp19/Pso4-like
PRP1_N	PF06424	8	65	145 aa	47%		PRP1 splicing factor, N-terminal
PRP3	PF08572	23	75	356 aa	34%		pre-mRNA processing factor 3 (PRP3)
PRP38	PF03371	4	105	172 aa	35%		PRP38 family
PRP4	PF08799	32	109	30 aa	50%		pre-mRNA processing factor 4 (PRP4) like
PrpR_N	PF06506	9	83	172 aa	30%		Propionate catabolism activator
PRRSV_2b	PF07069	2	16	72 aa	87%		Porcine reproductive and respiratory syndrome virus (PRRSV) 2b protein
PRRSV_Env	PF02340	4	82	231 aa	80%		PRRSV putative envelope protein
PRTP	PF01366	17	126	567 aa	34%		Herpesvirus processing and transport protein
PRT_C	PF08372	26	75	144 aa	64%		Plant phosphoribosyltransferase C-terminal
PsaA_PsaB	PF00223	3	985	543 aa	59%	1jb0	Photosystem I psaA/psaB protein
PsaD	PF02531	7	65	134 aa	64%	1jb0	PsaD
PsaL	PF02605	11	62	147 aa	49%	1jb0	Photosystem I reaction centre subunit XI
PsaM	PF07465	19	62	28 aa	48%	1jb0	Photosystem I protein M (PsaM)
PsaN	PF05479	3	18	99 aa	54%		Photosystem I reaction centre subunit N (PSAN or PSI-N)
PsaX	PF08078	2	5	35 aa	74%		PsaX family
Psb28	PF03912	25	49	107 aa	46%		Psb28 protein
PsbH	PF00737	16	444	30 aa	79%		Photosystem II 10 kDa phosphoprotein
PsbI	PF02532	6	142	35 aa	81%		Photosystem II reaction centre I protein (PSII 4.8 kDa protein)
PsbJ	PF01788	8	397	34 aa	80%		PsbJ
PsbK	PF02533	8	171	41 aa	72%		Photosystem II 4 kDa reaction centre component
PsbL	PF02419	3	411	37 aa	92%		PsbL protein
PsbM	PF05151	6	259	30 aa	77%		Photosystem II reaction centre M protein (PsbM)
PsbN	PF02468	7	617	43 aa	84%		Photosystem II reaction centre N protein (psbN)
PsbP	PF01789	9	97	157 aa	32%		PsbP
PsbQ	PF05757	10	39	170 aa	33%	1nze	Oxygen evolving enhancer protein 3 (PsbQ)
PsbR	PF04725	4	26	96 aa	73%		Photosystem II 10 kDa polypeptide PsbR
PsbT	PF01405	3	596	27 aa	89%		Photosystem II reaction centre T protein
PsbU	PF06514	7	36	126 aa	37%		Photosystem II 12 kDa extrinsic protein (PsbU)
PsbW	PF07123	2	15	107 aa	55%		Photosystem II reaction centre W protein (PsbW)
PsbX	PF06596	6	46	38 aa	45%		Photosystem II reaction centre X protein (PsbX)
PsbY	PF06298	8	39	35 aa	49%		Photosystem II protein Y (PsbY)
PSCyt1	PF07635	51	61	55 aa	30%		Planctomycete cytochrome C
PSCyt2	PF07583	40	62	210 aa	34%		Protein of unknown function (DUF1549)
PSCyt3	PF07627	16	35	100 aa	38%		Protein of unknown function (DUF1588)
PSD1	PF07587	41	62	258 aa	32%		Protein of unknown function (DUF1553)
PSD2	PF07624	15	25	76 aa	28%		Protein of unknown function (DUF1585)
PSD3	PF07626	14	26	68 aa	33%		Protein of unknown function (DUF1587)
PSD4	PF07631	13	33	128 aa	35%		Protein of unknown function (DUF1592)
PSD5	PF07637	14	29	63 aa	32%		Protein of unknown function (DUF1595)
PseudoU_synth_1	PF01416	92	1472	103 aa	21%	1dj0	tRNA pseudouridine synthase
PseudoU_synth_2	PF00849	49	3108	147 aa	25%	1ksl	RNA pseudouridylate synthase
Psf1	PF03651	3	42	187 aa	37%		Partner of SLD five, PSF1
Psf2	PF04128	6	62	154 aa	31%		Partner of SLD five, PSF2
Psf3	PF06425	7	60	155 aa	26%		Partner of SLD five, PSF3
PSGP	PF07276	3	135	13 aa	64%		Apopolysialoglycoprotein (PSGP)
PSI	PF01437	95	548	50 aa	27%	1olz	Plexin repeat
PsiA	PF06952	3	22	229 aa	66%		PsiA protein
PsiB	PF06290	2	25	138 aa	81%		Plasmid SOS inhibition protein (PsiB)
PsiE	PF06146	8	116	136 aa	31%		Phosphate-starvation-inducible E
PsiF_repeat	PF07769	12	132	33 aa	60%		psiF repeat
PSII	PF00421	19	1109	366 aa	45%		Photosystem II protein
PSI_8	PF00796	14	126	24 aa	69%	1jb0	Photosystem I reaction centre subunit VIII
PSI_PsaE	PF02427	11	73	62 aa	61%	1pse	Photosystem I reaction centre subunit IV / PsaE
PSI_PsaF	PF02507	10	65	153 aa	46%	1jb0	Photosystem I reaction centre subunit III
PSI_PsaH	PF03244	5	23	110 aa	69%		Photosystem I reaction centre subunit VI
PSI_PsaJ	PF01701	10	147	36 aa	66%	1jb0	Photosystem I reaction centre subunit IX / PsaJ
PSI_PSAK	PF01241	9	76	69 aa	33%	1jb0	Photosystem I psaG / psaK
PSK	PF06404	12	54	76 aa	37%		Phytosulfokine precursor protein (PSK)
PSK_trans_fac	PF07704	7	51	80 aa	34%		Rv0623-like transcription factor
PSP	PF04046	12	99	49 aa	48%		PSP
PSP1	PF04468	11	212	87 aa	39%		PSP1 C-terminal conserved region
PSP94	PF05825	7	21	97 aa	63%		Beta-microseminoprotein (PSP-94)
PspA_IM30	PF04012	11	346	219 aa	24%		PspA/IM30 family
PspB	PF06667	5	70	73 aa	50%		Phage shock protein B
PspC	PF04024	16	302	61 aa	32%		PspC domain
PSRP-3_Ycf65	PF04839	12	57	49 aa	60%		Plastid and cyanobacterial ribosomal protein (PSRP-3 / Ycf65)
PSRT	PF07636	5	7	29 aa	62%		PSRT
PSS	PF03034	9	49	254 aa	42%		Phosphatidyl serine synthase
Psu	PF07455	3	12	164 aa	61%		Phage polarity suppression protein (Psu)
PS_Dcarbxylase	PF02666	12	616	202 aa	27%		Phosphatidylserine decarboxylase
PS_pyruv_trans	PF04230	23	168	302 aa	18%		Polysaccharide pyruvyl transferase
PT	PF04886	15	267	33 aa	36%		PT repeat
PTA_PTB	PF01515	21	822	305 aa	32%	1r5j	Phosphate acetyl/butaryl transferase
PTB	PF08416	14	102	131 aa	32%		Phosphotyrosine-binding domain
PTE	PF02126	4	111	299 aa	31%	1dpm	Phosphotriesterase family
Pterin_4a	PF01329	5	404	95 aa	33%	1dco	Pterin 4 alpha carbinolamine dehydratase
Pterin_bind	PF00809	42	1333	205 aa	27%	1ajz	Pterin binding enzyme
PTH2	PF01981	9	134	90 aa	41%	1rlk	Peptidyl-tRNA hydrolase PTH2
PTN_MK_C	PF01091	9	53	61 aa	49%	1mkc	PTN/MK heparin-binding protein family, C-terminal domain
PTN_MK_N	PF05196	6	42	55 aa	65%	1mkc	PTN/MK heparin-binding protein family, N-terminal domain
PTPA	PF03095	8	106	283 aa	39%		Phosphotyrosyl phosphate activator (PTPA) protein
PTPLA	PF04387	13	138	154 aa	33%		Protein tyrosine phosphatase-like protein, PTPLA
PTPS	PF01242	4	460	121 aa	31%	1gtq	6-pyruvoyl tetrahydropterin synthase
PTR2	PF00854	25	977	338 aa	20%		POT family
PTS-HPr	PF00381	9	773	83 aa	33%	1ptf	PTS HPr component phosphorylation site
PTSIIA_gutA	PF03829	7	54	115 aa	38%		PTS system glucitol/sorbitol-specific IIA component
PTSIIB_sorb	PF03830	15	318	149 aa	34%	1ble	PTS system sorbose subfamily IIB component
PTS_2-RNA	PF01885	6	124	182 aa	31%		RNA 2'-phosphotransferase, Tpt1 / KptA family
PTS_EIIA_1	PF00358	14	648	131 aa	40%	1gla	phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 1
PTS_EIIA_2	PF00359	13	1297	142 aa	23%	1a6j	Phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 2
PTS_EIIB	PF00367	18	991	34 aa	43%	1iba	phosphotransferase system, EIIB
PTS_EIIC	PF02378	55	1995	289 aa	17%		Phosphotransferase system, EIIC
PTS_IIA	PF02255	10	291	95 aa	39%	1e2a	PTS system, Lactose/Cellobiose specific IIA subunit
PTS_IIB	PF02302	38	800	87 aa	23%	1e2b	PTS system, Lactose/Cellobiose specific IIB subunit
PTS_IIB_fruc	PF02379	14	443	101 aa	42%		PTS system, Fructose specific IIB subunit
PUA	PF01472	108	779	73 aa	27%	1it8	PUA domain
PUB	PF09409	67	130	84 aa	22%		PUB domain
PUCC	PF03209	11	116	396 aa	32%		PUCC protein
PucR	PF07905	27	135	125 aa	25%		Purine catabolism regulatory protein-like family
PUD	PF03714	17	125	97 aa	27%		Bacterial pullanase-associated domain
PUF	PF00806	50	2570	35 aa	20%	1m8z	Pumilio-family RNA binding repeat
PufQ	PF05398	3	9	74 aa	44%		PufQ cytochrome subunit
PUL	PF08324	24	71	264 aa	20%		PUL domain
PulS_OutS	PF09691	8	15	100 aa	42%		Bacterial chaperone lipoprotein (PulS_OutS)
PurA	PF04845	6	52	207 aa	55%		PurA ssDNA and RNA-binding protein
PurS	PF02700	5	248	78 aa	39%	1gtd	Phosphoribosylformylglycinamidine (FGAM) synthase
Pur_DNA_glyco	PF02245	8	287	179 aa	34%	1bnk	Methylpurine-DNA glycosylase (MPG)
PuR_N	PF09182	27	104	69 aa	54%	1o57	Bacterial purine repressor, N-terminal
Put_DNA-bind_N	PF06971	17	169	49 aa	44%	1r72	Putative DNA-binding protein N-terminus
Put_Phosphatase	PF06888	9	79	205 aa	26%		Putative Phosphatase
PV-1	PF06637	2	7	274 aa	59%		PV-1 protein (PLVAP)
PvlArgDC	PF01862	12	69	165 aa	36%	1n2m	Pyruvoyl-dependent arginine decarboxylase (PvlArgDC)
PVL_ORF50	PF07768	3	56	115 aa	54%		PVL ORF-50-like family
PWI	PF01480	9	104	74 aa	34%	1mp1	PWI domain
PWP2	PF04047	5	48	115 aa	35%		Periodic tryptophan protein 2 WD repeat associated presumed domain
PWWP	PF00855	14	424	74 aa	27%	1khc	PWWP domain
PX	PF00787	72	1236	114 aa	20%	1h6h	PX domain
PXA	PF02194	5	109	178 aa	24%		PXA domain
PYC_OADA	PF02436	20	425	195 aa	35%		Conserved carboxylase domain
PYNP_C	PF07831	54	297	73 aa	31%	1brw	Pyrimidine nucleoside phosphorylase C-terminal domain
Pyocin_S	PF06958	8	55	147 aa	31%		S-type Pyocin
PyrBI_leader	PF08052	2	13	41 aa	77%		PyrBI operon leader peptide
PyrI	PF01948	9	108	96 aa	46%	1acm	Aspartate carbamoyltransferase regulatory chain, allosteric domain
Pyridoxal_deC	PF00282	11	1582	265 aa	30%	1js3	Pyridoxal-dependent decarboxylase conserved domain
Pyridox_oxidase	PF01243	145	1663	90 aa	18%	1ci0	Pyridoxamine 5'-phosphate oxidase
PyrI_C	PF02748	9	103	51 aa	39%	1acm	Aspartate carbamoyltransferase regulatory chain, metal binding domain
Pyrophosphatase	PF00719	7	759	155 aa	41%	2prd	Inorganic pyrophosphatase
Pyr_excise	PF03013	3	40	135 aa	51%	2end	Pyrimidine dimer DNA glycosylase
Pyr_redox	PF00070	131	8619	83 aa	23%	3lad	Pyridine nucleotide-disulphide oxidoreductase
Pyr_redox_2	PF07992	146	9124	238 aa	21%	3lad	Pyridine nucleotide-disulphide oxidoreductase
Pyr_redox_dim	PF02852	102	2741	107 aa	28%	1lvl	Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain
PYST-C1	PF09690	14	32	69 aa	41%		Plasmodium yoelii subtelomeric region (PYST-C1)
PY_rept_46	PF09689	7	29	46 aa	64%		Plasmodium yoelii repeat (PY_rept_46)
P_C	PF06640	4	10	223 aa	62%		P protein C-terminus
P_fal_TIGR01639	PF09687	6	23	59 aa	39%		Protein of unknown function (P_fal_TIGR01639)
P_gingi_FimA	PF06321	4	19	344 aa	73%		Porphyromonas gingivalis major fimbrial subunit protein (FimA)
P_proprotein	PF01483	78	393	88 aa	32%		Proprotein convertase P-domain

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