Pfam 22.0 :: Browse Families

Pfam 22.0 :: Browse Families - C
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Browse Pfam

Available sections: Numbers A B C D E F G H I J K L M N O P Q R S T U V W X Y Z Top twenty families

Name	acc number	#seed	#full	av. len	av. %id	structure	Description
C
c-SKI_SMAD_bind	PF08782	9	60	91 aa	50%	1mr1	c-SKI Smad4 binding domain
C1-set	PF07654	128	6757	81 aa	37%		Immunoglobulin C1-set domain
C1q	PF00386	46	348	115 aa	32%	1c28	C1q domain
C1_1	PF00130	46	1334	52 aa	30%	2cpk	Phorbol esters/diacylglycerol binding domain (C1 domain)
C1_2	PF03107	97	406	30 aa	34%		C1 domain
C1_3	PF07649	196	577	29 aa	34%		C1-like domain
C1_4	PF07975	16	54	50 aa	46%		TFIIH C1-like domain
C2	PF00168	394	3892	84 aa	22%	1qas	C2 domain
C2-set	PF05790	27	131	77 aa	25%		Immunoglobulin C2-set domain
C2-set_2	PF08205	33	583	83 aa	20%	1dr9	CD80-like C2-set immunoglobulin domain
C4	PF01413	26	191	109 aa	48%	1li1	C-terminal tandem repeated domain in type 4 procollagen
C4dic_mal_tran	PF03595	50	335	267 aa	20%		C4-dicarboxylate transporter/malic acid transport protein
C5-epim_C	PF06662	5	24	182 aa	50%		D-glucuronyl C5-epimerase C-terminus
C6	PF01681	20	43	92 aa	24%		C6 domain
C8	PF08742	135	394	72 aa	29%		C8 domain
Caa3_CtaG	PF09678	29	161	242 aa	24%		Cytochrome c oxidase caa3 assembly factor (Caa3_CtaG)
Cache_1	PF02743	21	981	68 aa	23%		Cache domain
Cache_2	PF08269	34	475	91 aa	25%		Cache domain
Cad	PF03596	6	84	184 aa	43%		Cadmium resistance transporter
Cadherin	PF00028	57	7701	89 aa	24%	1nci	Cadherin domain
Cadherin_2	PF08266	79	539	84 aa	40%		Cadherin-like
Cadherin_C	PF01049	20	264	139 aa	41%	1i7w	Cadherin cytoplasmic region
Cadherin_pro	PF08758	55	86	83 aa	30%	1op4	Cadherin prodomain like
Caenor_Her-1	PF09232	3	5	124 aa	51%	1szh	Caenorhabditis elegans Her-1
Caerin_1	PF07440	2	22	23 aa	83%		Caerin 1 protein
CAF1	PF04857	29	211	287 aa	27%	1uoc	CAF1 family ribonuclease
CagA	PF03507	4	579	145 aa	65%		CagA exotoxin
CagE_TrbE_VirB	PF03135	15	380	188 aa	24%		CagE, TrbE, VirB family, component of type IV transporter system
CagX	PF03524	13	336	226 aa	26%		Conjugal transfer protein
CagY_M	PF07337	15	549	31 aa	52%		DC-EC Repeat
CagZ	PF09053	3	17	199 aa	98%		CagZ
CaKB	PF03185	4	25	193 aa	43%	1jo6	Calcium-activated potassium channel, beta subunit
Calcipressin	PF04847	9	89	174 aa	43%		Calcipressin
CALCOCO1	PF07888	3	65	421 aa	39%		Calcium binding and coiled-coil domain (CALCOCO1) like
Calcyon	PF06387	3	32	172 aa	55%		D1 dopamine receptor-interacting protein (calcyon)
Calc_CGRP_IAPP	PF00214	10	101	37 aa	46%	1bzb	Calcitonin / CGRP / IAPP family
Caldesmon	PF02029	2	60	200 aa	25%		Caldesmon
Caleosin	PF05042	9	55	162 aa	45%		Caleosin related protein
Calici_coat	PF00915	11	2093	139 aa	50%		Calicivirus coat protein
Calici_coat_C	PF08435	29	423	211 aa	54%		Calicivirus coat protein C-terminal
Calici_MSP	PF05752	7	54	164 aa	48%		Calicivirus minor structural protein
Calici_PP_N	PF08405	6	53	491 aa	62%		Viral polyprotein N-terminal
Calmodulin_bind	PF07887	9	58	249 aa	34%		Calmodulin binding protein-like
Calpain_III	PF01067	14	285	134 aa	37%	1dkv	Calpain large subunit, domain III
Calpain_inhib	PF00748	14	182	117 aa	37%	1nx1	Calpain inhibitor
Calponin	PF00402	5	321	25 aa	57%		Calponin family repeat
Calreticulin	PF00262	10	303	298 aa	48%	1jhn	Calreticulin family
Calsarcin	PF05556	4	33	270 aa	41%		Calcineurin-binding protein (Calsarcin)
Calsequestrin	PF01216	3	42	319 aa	63%	1a8y	Calsequestrin
Calx-beta	PF03160	36	749	85 aa	32%		Calx-beta domain
CaMBD	PF02888	8	73	75 aa	63%	1kkd	Calmodulin binding domain
CaMKII_AD	PF08332	7	181	107 aa	57%		Calcium/calmodulin dependent protein kinase II Association
Campylo_MOMP	PF05538	2	120	379 aa	74%		Campylobacter major outer membrane protein
CAMP_factor	PF07373	3	42	202 aa	51%		CAMP factor (Cfa)
CamS	PF07537	8	68	312 aa	37%		CamS sex pheromone cAM373 precursor
CaM_binding	PF07839	17	34	101 aa	37%		Plant calmodulin-binding domain
Candida_ALS	PF05792	3	98	396 aa	52%		Candida agglutinin-like protein (ALS)
CAP160	PF07918	9	15	27 aa	66%		CAP160 repeat
Capsid_Iridovir	PF04451	12	313	272 aa	32%	1j5q	Iridovirus major capsid protein
Capsule_synth	PF05159	23	310	230 aa	26%		Capsule polysaccharide biosynthesis protein
Caps_synth	PF05704	8	40	276 aa	25%		Capsular polysaccharide synthesis protein
CAP_C	PF08603	6	98	158 aa	43%	1kq5	DE Adenylate cyclase associated (CAP) C terminal
CAP_GLY	PF01302	40	351	67 aa	39%	1lpl	CAP-Gly domain
CAP_N	PF01213	6	102	263 aa	41%	1s0p	Adenylate cyclase associated (CAP) N terminal
Carboxyl_trans	PF01039	34	1860	304 aa	30%	1od2	Carboxyl transferase domain
CarbpepA_inh	PF02977	2	3	38 aa	81%	4cpa	Carboxypeptidase A inhibitor
Carbpep_Y_N	PF05388	4	8	117 aa	32%		Carboxypeptidase Y pro-peptide
Carb_anhydrase	PF00194	14	646	175 aa	30%	1can	Eukaryotic-type carbonic anhydrase
Carb_kinase	PF01256	9	581	236 aa	30%	1kyh	Carbohydrate kinase
Carcinustatin	PF08261	2	12	8 aa	88%		Carcinustatin peptide
CARD	PF00619	61	327	84 aa	21%	3crd	Caspase recruitment domain
CARDB	PF07705	72	193	105 aa	25%		CARDB
CarD_TRCF	PF02559	52	736	101 aa	31%		CarD-like/TRCF domain
Carla_C4	PF01623	10	118	89 aa	48%		Carlavirus putative nucleic acid binding protein
Carmo_coat_C	PF08462	8	26	99 aa	98%		Carmovirus coat protein
Carn_acyltransf	PF00755	19	295	497 aa	30%	1ndi	Choline/Carnitine o-acyltransferase
Carot_N	PF09150	8	27	154 aa	45%	1m98	Orange carotenoid protein, N-terminal
CART	PF06373	3	25	98 aa	65%	1hy9	Cocaine and amphetamine regulated transcript protein (CART)
Cas1p	PF07779	6	45	209 aa	44%		Cas1p-like protein
Cas6	PF09559	10	13	180 aa	32%		Cas6 Crispr
Casein	PF00363	15	87	73 aa	28%		Casein
Casein_kappa	PF00997	9	156	132 aa	71%		Kappa casein
CASP_C	PF08172	10	50	225 aa	38%		CASP C terminal
Cas_APE2256	PF09651	13	23	134 aa	27%		CRISPR-associated protein (Cas_APE2256)
Cas_Cas02710	PF09670	11	21	316 aa	22%		CRISPR-associated protein (Cas_Cas02710)
Cas_Cas2CT1978	PF09707	26	53	84 aa	46%		CRISPR-associated protein (Cas_Cas2CT1978)
Cas_Cas5a	PF09705	11	15	168 aa	24%		CRISPR-associated protein (Cas_Cas5a)
Cas_Cas5d	PF09704	35	54	201 aa	39%		CRISPR-associated protein (Cas_Cas5d)
Cas_Cas5e	PF09708	51	66	152 aa	36%		CRISPR-associated protein (Cas_Cas5e)
Cas_Cmr3	PF09700	25	30	355 aa	20%		CRISPR-associated protein (Cas_Cmr3)
Cas_Cmr5	PF09701	16	21	121 aa	27%		CRISPR-associated protein (Cas_Cmr5)
Cas_Csa4	PF09703	6	6	356 aa	22%		CRISPR-associated protein (Cas_Csa4)
Cas_Csa5	PF09702	5	8	95 aa	39%		CRISPR-associated protein (Cas_Csa5)
Cas_Csd1	PF09709	36	60	539 aa	25%		CRISPR-associated protein (Cas_Csd1)
CAS_CSE1	PF03378	4	57	366 aa	34%		CAS/CSE protein, C-terminus
Cas_Csm6	PF09659	4	11	298 aa	37%		CRISPR-associated protein (Cas_Csm6)
Cas_Csn2	PF09711	5	19	185 aa	74%		CRISPR-associated protein (Cas_Csn2)
Cas_csx3	PF09620	7	8	81 aa	46%		CRISPR-associated protein (Cas_csx3)
Cas_Csx8	PF09657	3	3	450 aa	41%		CRISPR-associated protein Csx8 (Cas_Csx8)
Cas_Csx9	PF09658	3	3	375 aa	67%		CRISPR-associated protein (Cas_Csx9)
Cas_Csy1	PF09611	19	25	361 aa	37%		CRISPR-associated protein (Cas_Csy1)
Cas_Csy2	PF09614	18	28	283 aa	37%		CRISPR-associated protein (Cas_Csy2)
Cas_Csy3	PF09615	23	31	332 aa	49%		CRISPR-associated protein (Cas_Csy3)
Cas_Csy4	PF09618	25	33	185 aa	36%		CRISPR-associated protein (Cas_Csy4)
Cas_CT1975	PF09344	25	69	352 aa	33%		CT1975-like protein
Cas_CXXC_CXXC	PF09706	9	11	64 aa	27%		CRISPR-associated protein (Cas_CXXC_CXXC)
Cas_DxTHG	PF09455	14	27	304 aa	19%		CRISPR-associated (Cas) DxTHG family
Cas_GSU0053	PF09617	4	4	170 aa	27%		CRISPR-associated protein GSU0053 (Cas_GSU0053)
Cas_GSU0054	PF09609	4	4	490 aa	23%		CRISPR-associated protein, GSU0054 family (Cas_GSU0054)
Cas_NE0113	PF09623	14	17	215 aa	28%		CRISPR-associated protein NE0113 (Cas_NE0113)
Cas_TM1802	PF09484	13	16	550 aa	21%		CRISPR-associated protein TM1802 (cas_TM1802)
Cas_TM1812	PF09530	22	28	194 aa	28%		CRISPR-associated protein (cas_TM1812)
Cas_VVA1548	PF09652	6	8	92 aa	39%		Putative CRISPR-associated protein (Cas_VVA1548)
CAT	PF00302	12	128	194 aa	39%	3cla	Chloramphenicol acetyltransferase
Catalase	PF00199	21	943	349 aa	46%	7cat	Catalase
Catalase-rel	PF06628	24	185	54 aa	42%	1ggh	Catalase-related
Cathelicidins	PF00666	8	83	66 aa	64%	1lyp	Cathelicidin
CathepsinC_exc	PF08773	10	52	102 aa	47%	1k3b	Cathepsin C exclusion domain
Cation_ATPase_C	PF00689	67	1284	159 aa	20%	1eul	Cation transporting ATPase, C-terminus
Cation_ATPase_N	PF00690	155	1626	77 aa	25%	1eul	Cation transporter/ATPase, N-terminus
Cation_efflux	PF01545	74	1916	251 aa	20%		Cation efflux family
CAT_RBD	PF03123	15	199	57 aa	38%	1h99	CAT RNA binding domain
Caudal_act	PF04731	9	42	127 aa	43%		Caudal like protein activation region
Caudo_TAP	PF02413	29	161	125 aa	28%		Caudovirales tail fibre assembly protein
Cauli_AT	PF03233	3	26	130 aa	69%		Aphid transmission protein
Cauli_DNA-bind	PF03310	3	20	99 aa	64%		Caulimovirus DNA-binding protein
Cauli_VI	PF01693	7	33	401 aa	43%		Caulimovirus viroplasmin
Caveolin	PF01146	5	134	157 aa	52%		Caveolin
CAV_VP3	PF04771	7	62	103 aa	97%		Chicken anaemia virus VP-3 protein
Ca_channel_B	PF00774	5	113	194 aa	72%		Dihydropyridine sensitive L-type calcium channel (Beta subunit)
Ca_chan_IQ	PF08763	13	135	34 aa	52%		Voltage gated calcium channel IQ domain
CBAH	PF02275	8	244	260 aa	25%	3pva	Linear amide C-N hydrolases, choloylglycine hydrolase family
Cbb3_Q_epsi	PF09672	8	15	56 aa	50%		Cytochrome c oxidase cbb3-type (Cbb3_Q_epsi)
CbbQ_C	PF08406	32	120	85 aa	40%		CbbQ/NirQ/NorQ C-terminal
CBF	PF03914	19	133	166 aa	29%		CBF/Mak21 family
CBFB_NFYA	PF02045	10	116	57 aa	66%		CCAAT-binding transcription factor (CBF-B/NF-YA) subunit B
CBFD_NFYB_HMF	PF00808	28	544	64 aa	29%	1bfm	Histone-like transcription factor (CBF/NF-Y) and archaeal histone
CBFNT	PF08143	5	28	67 aa	55%		CBFNT (NUC161) domain
CBF_beta	PF02312	3	29	151 aa	62%	1cl3	Core binding factor beta subunit
CbiA	PF01656	80	3104	214 aa	18%	1dts	CobQ/CobB/MinD/ParA nucleotide binding domain
CbiC	PF02570	7	257	198 aa	39%	1f2v	Precorrin-8X methylmutase
CbiD	PF01888	6	190	290 aa	36%		CbiD
CbiG	PF01890	6	267	185 aa	28%		CbiG
CbiJ	PF02571	4	191	241 aa	30%		Precorrin-6x reductase CbiJ/CobK
CbiK	PF06180	8	56	256 aa	36%	1qgo	Cobalt chelatase (CbiK)
CbiM	PF01891	12	212	183 aa	29%		CbiM
CbiN	PF02553	12	70	71 aa	44%		Cobalt transport protein component CbiN
CbiQ	PF02361	21	734	205 aa	20%		Cobalt transport protein
CbiX	PF01903	76	493	102 aa	23%		CbiX
CbiZ	PF01955	22	77	192 aa	28%		Adenosylcobinamide amidohydrolase
CblD	PF07434	5	25	319 aa	37%		CblD like pilus biogenesis initiator
Cbl_N	PF02262	3	37	122 aa	60%	1b47	CBL proto-oncogene N-terminal domain 1
Cbl_N2	PF02761	3	38	80 aa	67%	1b47	CBL proto-oncogene N-terminus, EF hand-like domain
Cbl_N3	PF02762	3	35	84 aa	79%	1b47	CBL proto-oncogene N-terminus, SH2-like domain
CBM27	PF09212	2	6	171 aa	53%	1oh4	Carbohydrate binding module 27
CBM49	PF09478	28	100	84 aa	27%		Carbohydrate binding domain CBM49
CBM_1	PF00734	18	318	29 aa	53%	1cel	Fungal cellulose binding domain
CBM_10	PF02013	38	163	35 aa	45%	1qld	Cellulose or protein binding domain
CBM_11	PF03425	5	16	182 aa	25%		Carbohydrate binding domain (family 11)
CBM_14	PF01607	210	1526	51 aa	25%	1dqc	Chitin binding Peritrophin-A domain
CBM_15	PF03426	2	2	158 aa	58%	1gny	Carbohydrate binding domain (family 15)
CBM_17_28	PF03424	7	33	166 aa	34%	1g0c	Carbohydrate binding domain (family 17/28)
CBM_19	PF03427	2	9	51 aa	44%		Carbohydrate binding domain (family 19)
CBM_2	PF00553	17	283	93 aa	30%	1exg	Cellulose binding domain
CBM_20	PF00686	20	255	87 aa	31%	1cdg	Starch binding domain
CBM_21	PF03370	8	116	112 aa	32%		Putative phosphatase regulatory subunit
CBM_25	PF03423	9	36	84 aa	39%		Carbohydrate binding domain (family 25)
CBM_3	PF00942	29	178	82 aa	30%	1nbc	Cellulose binding domain
CBM_4_9	PF02018	47	427	139 aa	16%	1ulp	Carbohydrate binding domain
CBM_5_12	PF02839	49	543	39 aa	34%	1ed7	Carbohydrate binding domain
CBM_6	PF03422	41	287	121 aa	23%	1gmm	Carbohydrate binding module (family 6)
CBM_X	PF06204	17	165	60 aa	34%		Putative carbohydrate binding domain
CBP4	PF07960	7	21	110 aa	37%		CBP4
CBS	PF00571	438	6974	119 aa	18%	1zfj	CBS domain pair
CbtA	PF09490	15	28	225 aa	44%		Probable cobalt transporter subunit (CbtA)
CbtB	PF09489	16	23	55 aa	43%		Probable cobalt transporter subunit (CbtB)
CC	PF04942	20	60	32 aa	33%		CC domain
CCD	PF07860	2	5	112 aa	86%		WisP family C-Terminal Region
CcdA	PF07362	2	39	72 aa	41%		Post-segregation antitoxin CcdA
CcdB	PF01845	2	32	100 aa	63%	4vub	CcdB protein
CCG	PF02754	65	1871	63 aa	22%		Cysteine-rich domain
CcmB	PF03379	13	299	207 aa	34%		CcmB protein
CcmD	PF04995	14	135	45 aa	31%		Heme exporter protein D (CcmD)
CcmE	PF03100	10	233	131 aa	45%	1j6q	CcmE
CcmH	PF03918	7	265	142 aa	35%		Cytochrome C biogenesis protein
CcoS	PF03597	11	163	49 aa	39%		Cytochrome oxidase maturation protein cbb3-type
CCP_MauG	PF03150	11	333	180 aa	32%	1eb7	Di-haem cytochrome c peroxidase
CCT	PF06203	49	301	44 aa	54%		CCT motif
CCT_2	PF09425	19	58	26 aa	61%		Divergent CCT motif
CD20	PF04103	16	80	134 aa	28%		CD20/IgE Fc receptor beta subunit family
CD225	PF04505	6	69	80 aa	39%		Interferon-induced transmembrane protein
CD34_antigen	PF06365	8	42	180 aa	42%		CD34/Podocalyxin family
CD36	PF01130	11	192	365 aa	26%		CD36 family
CD4-extracel	PF09191	9	36	106 aa	71%	1cid	CD4, extracellular
CD47	PF04549	11	46	154 aa	41%		CD47 transmembrane region
CDC13-DNA-bind	PF09283	4	4	177 aa	25%	1s40	CDC13, ssDNA binding
CDC14	PF08045	5	19	248 aa	47%		Cell division control protein 14, SIN component
CDC24	PF06395	3	22	88 aa	42%		CDC24 Calponin
CDC27	PF09507	20	63	321 aa	29%		DNA polymerase subunit Cdc27
CDC37_C	PF08564	20	60	88 aa	33%	1us7	Cdc37 C terminal domain
CDC37_M	PF08565	20	76	155 aa	34%	1us7	Cdc37 Hsp90 binding domain
CDC37_N	PF03234	22	77	117 aa	40%	1us7	Cdc37 N terminal kinase binding
CDC45	PF02724	7	62	603 aa	30%		CDC45-like protein
CDC48_2	PF02933	91	165	84 aa	20%	1cz4	Cell division protein 48 (CDC48), domain 2
CDC48_N	PF02359	23	260	83 aa	26%	1cz4	Cell division protein 48 (CDC48), N-terminal domain
CDC50	PF03381	10	167	249 aa	33%		LEM3 (ligand-effect modulator 3) family / CDC50 family
Cdc6_C	PF09079	51	188	79 aa	29%	1fnn	CDC6, C terminal
CDC73	PF05179	6	64	272 aa	25%		RNA pol II accessory factor, Cdc73 family
CDH	PF02611	3	47	244 aa	46%		CDP-diacylglycerol pyrophosphatase
CdhC	PF03598	5	40	401 aa	49%	1mjg	CO dehydrogenase/acetyl-CoA synthase complex beta subunit
CdhD	PF03599	9	73	346 aa	30%		CO dehydrogenase/acetyl-CoA synthase delta subunit
CDI	PF02234	22	109	50 aa	38%	1jsu	Cyclin-dependent kinase inhibitor
CDK5_activator	PF03261	5	43	278 aa	58%	1h4l	Cyclin-dependent kinase 5 activator protein
CDKN3	PF05706	2	22	160 aa	73%	1fq1	Cyclin-dependent kinase inhibitor 3 (CDKN3)
CDO_I	PF05995	8	144	165 aa	23%		Cysteine dioxygenase type I
CDP-OH_P_transf	PF01066	68	1726	132 aa	20%		CDP-alcohol phosphatidyltransferase
CDP-OH_P_tran_2	PF08009	5	29	37 aa	44%		CDP-alcohol phosphatidyltransferase 2
CDRN	PF05174	5	6	55 aa	74%		Cysteine-rich D. radiodurans N terminus
CDT1	PF08839	11	29	157 aa	29%	1wlq	DNA replication factor CDT1 like
CDtoxinA	PF03498	10	63	145 aa	27%		Cytolethal distending toxin A/C family
Cecropin	PF00272	16	114	31 aa	48%	1f0d	Cecropin family
CelD_N	PF02927	15	63	88 aa	31%	1clc	N-terminal ig-like domain of cellulase
Cellsynth_D	PF03500	2	5	134 aa	87%		Cellulose synthase subunit D
Cellulase	PF00150	65	822	245 aa	17%	2exo	Cellulase (glycosyl hydrolase family 5)
Cellulose_synt	PF03552	15	353	497 aa	42%		Cellulose synthase
CemA	PF03040	14	132	221 aa	44%		CemA family
Cenp-B_dimeris	PF09026	2	9	95 aa	92%		Centromere protein B dimerisation domain
CENP-B_N	PF04218	6	66	49 aa	29%	1bw6	CENP-B N-terminal DNA-binding domain
CENP-H	PF05837	3	6	209 aa	43%		Centromere protein H (CENP-H)
Cenp-O	PF09496	25	34	91 aa	29%		Cenp-O kinetochore centromere component
CenpB-DNA-bind	PF09091	44	124	63 aa	27%	1hlv	Centromere binding protein B, DNA binding
CEP1-DNA_bind	PF09287	2	2	196 aa	47%	1t4w	CEP-1, DNA binding
Ceramidase_alk	PF04734	6	55	627 aa	39%		Neutral/alkaline non-lysosomal ceramidase
Cerato-platanin	PF07249	5	33	114 aa	54%		Cerato-platanin
CesT	PF05932	35	200	114 aa	19%	1jyo	Tir chaperone protein (CesT)
CfAFP	PF05264	4	32	75 aa	57%	1m8n	Choristoneura fumiferana antifreeze protein (CfAFP)
CFC	PF09443	9	24	35 aa	54%		Cripto_Frl-1_Cryptic (CFC)
CFEM	PF05730	8	111	65 aa	30%		CFEM domain
CG-1	PF03859	4	48	113 aa	52%		CG-1 domain
CGGC	PF08821	13	38	103 aa	30%		CGGC domain
CGI-121	PF08617	21	45	106 aa	30%		Kinase binding protein CGI-121
Cgr1	PF03879	4	24	106 aa	47%		Cgr1 family
CgtA	PF06306	2	37	285 aa	58%		Beta-1,4-N-acetylgalactosaminyltransferase (CgtA)
CH	PF00307	192	2091	105 aa	20%	1aoa	Calponin homology (CH) domain
ChaB	PF06150	17	116	60 aa	33%		ChaB
ChaC	PF04752	15	199	173 aa	34%		ChaC-like protein
CHAD	PF05235	18	220	251 aa	20%		CHAD domain
Chagasin_I42	PF09394	38	88	99 aa	26%		Chagasin peptidase inhibitor I42
Chalcone	PF02431	11	89	168 aa	56%	1eyp	Chalcone-flavanone isomerase
Chal_sti_synt_C	PF02797	21	1296	129 aa	55%	1cml	Chalcone and stilbene synthases, C-terminal domain
Chal_sti_synt_N	PF00195	21	1135	173 aa	59%	1cml	Chalcone and stilbene synthases, N-terminal domain
Channel_Tsx	PF03502	2	74	136 aa	48%		Nucleoside-specific channel-forming protein, Tsx
CHAP	PF05257	96	602	123 aa	23%		CHAP domain
Chaperone_III	PF07824	3	11	110 aa	54%		Type III secretion chaperone domain
ChAPs	PF09295	16	37	379 aa	33%		ChAPs (Chs5p-Arf1p-binding proteins)
CHASE	PF03924	13	237	203 aa	20%		CHASE domain
CHASE2	PF05226	21	219	294 aa	22%		CHASE2 domain
CHASE3	PF05227	26	215	136 aa	22%		CHASE3 domain
CHASE4	PF05228	15	82	162 aa	18%		CHASE4 domain
CHB_HEX	PF03173	6	71	160 aa	32%	1c7s	Putative carbohydrate binding domain
CHB_HEX_C	PF03174	5	51	65 aa	45%	1c7s	Chitobiase/beta-hexosaminidase C-terminal domain
CHCH	PF06747	46	362	40 aa	20%		CHCH domain
CHD5	PF04420	3	36	154 aa	33%		CHD5-like protein
CHDCT2	PF08074	3	37	165 aa	82%		CHDCT2 (NUC038) domain
CHDNT	PF08073	6	34	54 aa	68%		CHDNT (NUC034) domain
CheB_methylest	PF01339	8	671	181 aa	36%	1chd	CheB methylesterase
CheC	PF04509	33	530	33 aa	29%	1squ	CheC-like family
CheD	PF03975	10	196	113 aa	32%		CheD
CheR	PF01739	22	731	193 aa	31%	1af7	CheR methyltransferase, SAM binding domain
CheR_N	PF03705	85	623	56 aa	22%	1af7	CheR methyltransferase, all-alpha domain
CheW	PF01584	252	1940	135 aa	21%	1b3q	CheW-like domain
CheY-binding	PF09078	30	53	64 aa	46%	1ffg	CheY binding
CheZ	PF04344	2	126	227 aa	42%	1kmi	Chemotaxis phosphatase, CheZ
CHGN	PF05679	6	56	463 aa	28%		Chondroitin N-acetylgalactosaminyltransferase
ChiC	PF06483	7	35	176 aa	50%		Chitinase C
ChitinaseA_N	PF08329	26	109	132 aa	47%	1ctn	Chitinase A, N-terminal domain
Chitin_bind_1	PF00187	18	436	38 aa	56%	1wgt	Chitin recognition protein
Chitin_bind_3	PF03067	26	233	201 aa	27%		Chitin binding domain
Chitin_bind_4	PF00379	68	784	65 aa	33%		Insect cuticle protein
Chitin_synth_1	PF01644	14	392	141 aa	55%		Chitin synthase
Chitin_synth_1N	PF08407	41	116	79 aa	45%		Chitin synthase N-terminal
Chitin_synth_2	PF03142	10	328	252 aa	44%		Chitin synthase
Chitosanase	PF07335	5	34	214 aa	45%		Fungal chitosanase
CHL4	PF05238	16	32	407 aa	23%		Kinetochore protein CHL4 like
ChlamPMP_M	PF07548	55	235	171 aa	26%		Chlamydia polymorphic membrane protein middle domain
Chlamy_scaf	PF09675	4	7	112 aa	52%		Chlamydia-phage Chp2 scaffold (Chlamy_scaf)
Chlam_OMP	PF01308	3	625	249 aa	70%		Chlamydia major outer membrane protein
Chlam_OMP3	PF03503	3	10	53 aa	76%		Chlamydia cysteine-rich outer membrane protein 3
Chlam_OMP6	PF03504	2	36	90 aa	85%		Chlamydia cysteine-rich outer membrane protein 6
Chlam_PMP	PF02415	528	3670	21 aa	33%		Chlamydia polymorphic membrane protein (Chlamydia_PMP)
Chlam_vir	PF05475	3	19	178 aa	69%		Chlamydia virulence protein PGP3-D
Chloroa_b-bind	PF00504	49	679	147 aa	39%	1rwt	Chlorophyll A-B binding protein
Chlorophyllase	PF07224	4	18	238 aa	42%		Chlorophyllase
Chlorovi_GP_rpt	PF06598	37	123	31 aa	43%		Chlorovirus glycoprotein repeat
Chlor_dismutase	PF06778	16	142	179 aa	31%		Chlorite dismutase
CHMI	PF02962	3	109	113 aa	34%	1otg	5-carboxymethyl-2-hydroxymuconate isomerase
CholecysA-Rec_N	PF09193	6	8	47 aa	72%	1d6g	Cholecystokinin A receptor, N-terminal
Choline_kinase	PF01633	38	278	200 aa	25%		Choline/ethanolamine kinase
Choline_kin_N	PF04428	10	31	44 aa	24%		Choline kinase N terminus
Chol_subst-bind	PF09129	3	9	323 aa	63%	1i19	Cholesterol oxidase, substrate-binding
Chon_Sulph_att	PF06566	2	6	240 aa	68%		Chondroitin sulphate attachment domain
CHORD	PF04968	11	132	63 aa	46%		CHORD
Chordopox_A13L	PF05961	4	39	67 aa	64%		Chordopoxvirus A13L protein
Chordopox_A15	PF05846	6	29	90 aa	60%		Chordopoxvirus A15 protein
Chordopox_A20R	PF05941	6	44	327 aa	53%		Chordopoxvirus A20R protein
Chordopox_A30L	PF06015	5	42	72 aa	56%		Chordopoxvirus A30L protein
Chordopox_A33R	PF05966	6	42	176 aa	50%		Chordopoxvirus A33R protein
Chordopox_A35R	PF05989	6	36	157 aa	50%		Chordopoxvirus A35R protein
Chordopox_E11	PF06138	5	32	125 aa	56%		Chordopoxvirus E11 protein
Chordopox_G2	PF05796	7	42	221 aa	57%		Chordopoxvirus protein G2
Chordopox_G3	PF06129	7	37	107 aa	52%		Chordopoxvirus G3 protein
Chordopox_L2	PF05803	6	31	86 aa	58%		Chordopoxvirus L2 protein
Chordopox_RPO7	PF05864	4	32	62 aa	77%		Chordopoxvirus DNA-directed RNA polymerase 7 kDa polypeptide (RPO7)
Chorion_1	PF01723	7	42	139 aa	44%		Chorion protein
Chorion_2	PF03964	8	19	118 aa	30%		Chorion family 2
Chorion_3	PF05387	2	20	232 aa	54%		Chorion family 3
Chorion_S16	PF05836	5	10	139 aa	66%		Chorion protein S16
Chorismate_bind	PF00425	25	1591	256 aa	33%	1qdl	chorismate binding enzyme
Chorismate_synt	PF01264	13	605	348 aa	45%	1q1l	Chorismate synthase
Chor_lyase	PF04345	3	155	145 aa	31%	1jd3	Chorismate lyase
CHP02267_MYXXA	PF09543	16	18	121 aa	47%		Protein of unknown function (CHP02267_MYXXA)
CHP02269_MYXXA	PF09533	8	9	215 aa	46%		Predicted lipoprotein of unknown function (CHP02269_MYXXA)
CHP02301	PF09539	12	32	95 aa	46%		Protein of unknown function (CHP02301)
CHP02328	PF09541	11	17	120 aa	63%		Protein of unknown function (CHP02328)
CHP02336	PF09508	7	13	728 aa	50%		Protein of unknown function (CHP02336)
CHP02443	PF09526	38	85	63 aa	43%		Probable metal-binding protein (CHP02443)
CHP02444	PF09523	47	62	107 aa	31%		Protein of unknown function (CHP02444)
CHP02448	PF09498	29	67	95 aa	44%		Protein of unknown function (CHP02448)
CHP02450_Tryp	PF09493	46	67	60 aa	32%		Tryptophan-rich protein (CHP02450_Tryp)
CHP02453	PF09365	39	106	202 aa	28%		Conserved hypothetical protein CHP02453
CHP02569_actnb	PF09616	6	21	149 aa	63%		Conserved protein of unknown function (CHP02569_actnb)
CHP02587	PF09622	9	11	270 aa	39%		Putative integral membrane protein (CHP02587)
CHP02588	PF09624	9	11	118 aa	32%		Protein of unknown function (CHP02588)
CHP02611	PF09656	24	38	53 aa	40%		Putative transmembrane protein (CHP02611)
CHP02647	PF09653	22	36	75 aa	50%		Protein of unknown function (CHP02647)
CHP02652	PF09654	7	13	161 aa	70%		Protein of unknown function (CHP02652)
CHP02677	PF09660	15	20	431 aa	26%		Protein of unknown function (CHP02677)
CHP02678	PF09661	15	18	381 aa	26%		Protein of unknown function (CHP02678)
CHP02679	PF09664	13	19	340 aa	27%		Protein of unknown function (CHP02679)
CHP02757	PF09674	26	40	219 aa	36%		Protein of unknown function (CHP02757)
CHP02922	PF09558	6	13	70 aa	71%		Protein of unknown function (CHP02922)
CHP1606_PLAF3D7	PF09688	4	6	127 aa	29%		Protein of unknown function (CHP1606_PLAF3D7)
CHP2216_phage	PF09550	23	25	43 aa	45%		Conserved hypothetical phage protein (CHP2216_phage)
CHP2217	PF09343	15	56	195 aa	40%		Conserved hypothetical protein 2217
CHP2241_phage	PF09540	65	90	138 aa	27%		Putative phage tail protein (CHP2241_phage)
CHP2271_C	PF09557	42	56	114 aa	31%		Domain of unknown function (CHP2271_C)
CHP2284	PF09537	46	60	110 aa	29%		Protein of unknown function (CHP2284)
CHP2293	PF09722	25	96	107 aa	28%		Protein of unknown function (CHP2293)
Chp_urease_rgn	PF09601	22	28	169 aa	29%		Protein of unknown function (Chp_urease_rgn)
CHRD	PF07452	27	150	114 aa	22%		CHRD domain
Chromadorea_ALT	PF05535	6	20	72 aa	64%		Chromadorea ALT protein
Chromate_transp	PF02417	9	690	169 aa	25%		Chromate transporter
Chromo	PF00385	178	1612	51 aa	31%	1ap0	'chromo' (CHRromatin Organisation MOdifier) domain
Chromo_shadow	PF01393	11	92	55 aa	54%	1e0b	Chromo shadow domain
Churchill	PF06573	3	11	111 aa	72%		Churchill protein
ChW	PF07538	87	219	36 aa	43%		Clostridial hydrophobic W
CHZ	PF09649	24	25	36 aa	41%		Histone chaperone domain CHZ
CI-B14_5a	PF07347	2	20	93 aa	58%		NADH:ubiquinone oxidoreductase subunit B14.5a (Complex I-B14.5a)
CIA30	PF08547	46	155	171 aa	24%		Complex I intermediate-associated protein 30 (CIA30)
CIDE-N	PF02017	7	80	76 aa	38%	1f2r	CIDE-N domain
cIII	PF08134	3	3	44 aa	100%		cIII protein family
CIMR	PF00878	12	340	127 aa	29%	1e6f	Cation-independent mannose-6-phosphate receptor repeat
CinA	PF02464	12	538	150 aa	37%		Competence-damaged protein
Circo_coat	PF04162	22	112	332 aa	92%		Circovirus coat protein (VP1)
Circo_ORF2	PF02443	2	317	219 aa	61%		Circovirus ORF-2 protein
Circo_VP2	PF04861	12	58	168 aa	95%		Circovirus VP2 protein
Cir_Bir_Yir	PF06022	7	1113	263 aa	35%		Plasmodium variant antigen protein Cir/Yir/Bir
CitD	PF04953	8	68	94 aa	46%		Citrate lyase, gamma subunit
CITED	PF04487	7	36	176 aa	42%	1p4q	CITED
CitF	PF04223	5	82	440 aa	59%		Citrate lyase, alpha subunit (CitF)
CitG	PF01874	12	177	256 aa	29%		ATP:dephospho-CoA triphosphoribosyl transferase
CitMHS	PF03600	32	1084	406 aa	15%		Citrate transporter
Citrate_ly_lig	PF08218	15	72	176 aa	47%		Citrate lyase ligase C-terminal domain
Citrate_synt	PF00285	20	1773	275 aa	43%	1csc	Citrate synthase
Citrus_P18	PF05520	3	40	157 aa	96%		Citrus tristeza virus P18 protein
CitX	PF03802	6	68	160 aa	35%		Apo-citrate lyase phosphoribosyl-dephospho-CoA transferase
CKS	PF01111	7	106	74 aa	56%	1cks	Cyclin-dependent kinase regulatory subunit
CK_II_beta	PF01214	7	207	165 aa	44%	1qf8	Casein kinase II regulatory subunit
CLAG	PF03805	2	41	816 aa	44%		Cytoadherence-linked asexual protein
Clathrin	PF00637	63	660	137 aa	16%	1b89	Region in Clathrin and VPS
Clathrin-link	PF09268	5	51	24 aa	57%	1utc	Clathrin, heavy-chain linker
Clathrin_lg_ch	PF01086	3	76	182 aa	41%		Clathrin light chain
Clathrin_propel	PF01394	71	490	36 aa	15%	1bpo	Clathrin propeller repeat
Clat_adaptor_s	PF01217	7	505	140 aa	30%	1gw5	Clathrin adaptor complex small chain
Clavanin	PF05452	2	6	70 aa	83%		Clavanin
Clc-like	PF07062	7	16	212 aa	34%		Clc-like
CLCA_N	PF08434	10	46	252 aa	61%		Calcium-activated chloride channel
Cleaved_Adhesin	PF07675	9	62	168 aa	56%		Cleaved Adhesin Domain
Clenterotox	PF03505	4	28	147 aa	49%		Clostridium enterotoxin
CLN3	PF02487	5	80	330 aa	37%		CLN3 protein
Cloacin	PF03515	4	14	213 aa	54%	1jch	Cloacin
Cloacin_immun	PF03513	3	10	78 aa	68%	3eip	Cloacin immunity protein
Closter_coat	PF01785	11	537	154 aa	34%		Closterovirus coat protein
Clostridium_P47	PF06597	4	18	288 aa	45%		Clostridium P-47 protein
Clp1	PF06807	5	62	170 aa	34%		Pre-mRNA cleavage complex II protein Clp1
ClpS	PF02617	52	432	80 aa	36%	1mbx	ATP-dependent Clp protease adaptor protein ClpS
CLPTM1	PF05602	8	84	487 aa	37%		Cleft lip and palate transmembrane protein 1 (CLPTM1)
Clp_N	PF02861	167	2489	51 aa	24%	1mbx	Clp amino terminal domain
CLP_protease	PF00574	88	1236	172 aa	43%	1tyf	Clp protease
Clusterin	PF01093	5	47	341 aa	44%		Clusterin
CM1	PF03026	2	129	218 aa	100%		Influenza C virus M1 protein
CM2	PF03021	2	109	139 aa	98%		Influenza C virus M2 protein
CMAS	PF02353	12	595	270 aa	36%	1kpi	Cyclopropane-fatty-acyl-phospholipid synthase
CmcH_NodU	PF02543	11	165	341 aa	33%		Carbamoyltransferase
CmcI	PF04989	4	50	233 aa	33%		Cephalosporin hydroxylase
CMD	PF02627	217	1628	83 aa	20%	1knc	Carboxymuconolactone decarboxylase family
CMV_US	PF08001	4	31	212 aa	39%		CMV US
Cmyb_C	PF09316	12	65	154 aa	50%		C-myb, C-terminal
CM_1	PF07736	4	84	115 aa	43%	1fnj	Chorismate mutase type I
CM_2	PF01817	102	738	78 aa	25%	1csm	Chorismate mutase type II
Cm_res_leader	PF08077	2	3	16 aa	84%		Chloramphenicol resistance gene leader peptide
Cna_B	PF05738	135	2010	65 aa	24%	1d2o	Cna protein B-type domain
CNF1	PF05785	4	19	275 aa	41%	1hzg	Rho-activating domain of cytotoxic necrotizing factor
CNH	PF00780	22	233	269 aa	20%		CNH domain
Cnl2_NKP2	PF09447	11	16	66 aa	42%		Cnl2/NKP2 family protein
cNMP_binding	PF00027	351	5773	90 aa	18%	1cgp	Cyclic nucleotide-binding domain
CNP1	PF08750	10	38	147 aa	39%		CNP1-like family
CNPase	PF05881	5	18	365 aa	56%	1n4t	2',3'-cyclic nucleotide 3'-phosphodiesterase (CNP or CNPase)
CNTF	PF01110	2	9	184 aa	77%	1cnt	Ciliary neurotrophic factor
CN_hydrolase	PF00795	48	2367	176 aa	20%	1ems	Carbon-nitrogen hydrolase
CoaE	PF01121	13	650	176 aa	33%	1jjv	Dephospho-CoA kinase
Coagulase	PF08764	11	68	227 aa	45%	1nu9	Staphylococcus aureus coagulase
Coagulin	PF02035	2	4	173 aa	78%	1aoc	Coagulin
Coatamer_beta_C	PF07718	11	94	260 aa	41%		Coatamer beta C-terminal region
Coatomer_E	PF04733	7	75	270 aa	33%		Coatomer epsilon subunit
Coatomer_WDAD	PF04053	14	180	385 aa	29%		Coatomer WD associated region
Coat_F	PF07875	17	79	65 aa	25%		Coat F domain
Coat_X	PF07552	12	41	59 aa	40%		Spore Coat Protein X and V domain
CoA_binding	PF02629	62	1463	95 aa	27%	1cqi	CoA binding domain
CoA_trans	PF01144	43	1232	205 aa	26%	1poi	Coenzyme A transferase
CoA_transf_3	PF02515	17	1676	174 aa	32%	1p5r	CoA-transferase family III
Cobalamin_bind	PF01122	5	34	374 aa	40%		Eukaryotic cobalamin-binding protein
CobA_CobO_BtuR	PF02572	3	425	174 aa	38%	1g64	ATP:corrinoid adenosyltransferase BtuR/CobO/CobP
CobD_Cbib	PF03186	14	358	306 aa	30%		CobD/Cbib protein
Cobl	PF09469	4	20	285 aa	52%		Cordon-bleu domain
CobN-Mg_chel	PF02514	19	374	892 aa	31%		CobN/Magnesium Chelatase
COBRA1	PF06209	3	20	420 aa	59%		Cofactor of BRCA1 (COBRA1)
CobS	PF02654	8	346	237 aa	27%		Cobalamin-5-phosphate synthase
CobT	PF06213	10	88	546 aa	43%		Cobalamin biosynthesis protein CobT
CobU	PF02283	5	299	169 aa	39%	1cbu	Cobinamide kinase / cobinamide phosphate guanyltransferase
cobW	PF02492	62	1486	176 aa	28%	1nij	CobW/HypB/UreG, nucleotide-binding domain
CobW_C	PF07683	108	805	100 aa	24%	1nij	Cobalamin synthesis protein cobW C-terminal domain
Cob_adeno_trans	PF01923	37	349	165 aa	38%	1nog	Cobalamin adenosyltransferase
CodY	PF06018	17	94	176 aa	47%		CodY GAF-like domain
COesterase	PF00135	126	1678	419 aa	25%	1acj	Carboxylesterase
Cofilin_ADF	PF00241	16	456	123 aa	21%	2prf	Cofilin/tropomyosin-type actin-binding protein
COG2	PF06148	4	34	559 aa	36%		COG (conserved oligomeric Golgi) complex component, COG2
COG4	PF08318	15	54	308 aa	29%		COG4 transport protein
COG6	PF06419	6	60	523 aa	31%		Conserved oligomeric complex COG6
Cohesin	PF00963	42	172	142 aa	24%	1anu	Cohesin domain
CoiA	PF06054	14	100	291 aa	26%		Competence protein CoiA-like family
Coiled	PF05710	2	54	80 aa	47%		Coiled coil
Coleoptericin	PF06286	3	10	118 aa	54%		Coleoptericin
COLFI	PF01410	12	245	190 aa	48%		Fibrillar collagen C-terminal domain
Colicin	PF01024	9	48	187 aa	41%	1col	Colicin pore forming domain
ColicinD	PF09204	3	9	80 aa	50%	1v74	Colicin D
Colicin_im	PF03857	5	6	136 aa	40%		Colicin immunity protein
Colicin_Pyocin	PF01320	6	63	86 aa	49%	1cei	Colicin immunity protein / pyocin immunity protein
Colicin_V	PF02674	18	451	154 aa	22%		Colicin V production protein
Colipase	PF01114	5	16	39 aa	70%	1lpb	Colipase, N-terminal domain
Colipase_C	PF02740	5	16	44 aa	81%	1lpb	Colipase, C-terminal domain
Collagen	PF01391	41	9194	53 aa	41%	1a9a	Collagen triple helix repeat (20 copies)
Collagen_bind	PF05737	15	145	134 aa	20%	1amx	Collagen binding domain
Collar	PF07484	37	275	53 aa	36%	1ocy	Phage Tail Collar Domain
Col_cuticle_N	PF01484	55	300	61 aa	21%		Nematode cuticle collagen N-terminal domain
ComA	PF02679	7	52	243 aa	32%	1qwg	(2R)-phospho-3-sulfolactate synthase (ComA)
ComC	PF03047	12	32	43 aa	52%		COMC family
ComK	PF06338	5	73	166 aa	37%		ComK protein
Como_LCP	PF02247	10	56	337 aa	42%	1bmv	Large coat protein
Como_SCP	PF02248	10	21	177 aa	48%	1bmv	Small coat protein
Competence	PF03772	31	510	262 aa	22%		Competence protein
Complex1_24kDa	PF01257	5	592	149 aa	33%		Respiratory-chain NADH dehydrogenase 24 Kd subunit
Complex1_30kDa	PF00329	57	747	68 aa	42%		Respiratory-chain NADH dehydrogenase, 30 Kd subunit
Complex1_49kDa	PF00346	7	883	222 aa	38%		Respiratory-chain NADH dehydrogenase, 49 Kd subunit
Complex1_51K	PF01512	19	839	248 aa	39%		Respiratory-chain NADH dehydrogenase 51 Kd subunit
Complex1_LYR	PF05347	20	214	64 aa	23%		Complex 1 protein (LYR family)
ComX	PF05952	8	19	50 aa	40%		Bacillus competence pheromone ComX
Condensation	PF00668	42	3693	272 aa	21%	1l5a	Condensation domain
Connexin	PF00029	16	346	115 aa	47%		Connexin
Connexin43	PF03508	2	40	20 aa	92%		Gap junction alpha-1 protein (Cx43)
Connexin50	PF03509	4	13	67 aa	73%		Gap junction alpha-8 protein (Cx50)
Conotoxin	PF02950	123	483	67 aa	23%	2cco	Conotoxin
Cons_hypoth698	PF03601	13	368	292 aa	29%		Conserved hypothetical protein 698
Cons_hypoth95	PF03602	28	685	169 aa	28%		Conserved hypothetical protein 95
CopB	PF05275	9	109	243 aa	41%		Copper resistance protein B precursor (CopB)
CopC	PF04234	12	218	120 aa	29%	1ix2	Copper resistance protein CopC
CopD	PF05425	12	216	287 aa	23%		Copper resistance protein D
Copine	PF07002	20	185	141 aa	43%		Copine
COPI_assoc	PF08507	9	34	131 aa	28%		COPI associated protein
COPI_C	PF06957	5	92	378 aa	36%		Coatomer (COPI) alpha subunit C-terminus
Copper-bind	PF00127	31	441	87 aa	30%	1plc	Copper binding proteins, plastocyanin/azurin family
Copper-fist	PF00649	9	38	40 aa	55%	1co4	Copper fist DNA binding domain
Coprinus_mating	PF05920	9	29	558 aa	36%		Coprinus cinereus mating-type protein
Coprogen_oxidas	PF01218	5	350	294 aa	48%		Coproporphyrinogen III oxidase
Coq4	PF05019	5	63	198 aa	38%		Coenzyme Q (ubiquinone) biosynthesis protein Coq4
COQ7	PF03232	11	172	86 aa	28%		Ubiquinone biosynthesis protein COQ7
COQ9	PF08511	21	85	78 aa	36%		COQ9
Cor1	PF04803	5	55	120 aa	31%		Cor1/Xlr/Xmr conserved region
CorA	PF01544	25	977	293 aa	17%		CorA-like Mg2+ transporter protein
CorC_HlyC	PF03471	74	1341	79 aa	23%		Transporter associated domain
Cornichon	PF03311	9	95	125 aa	42%		Cornichon protein
Cornifin	PF02389	5	34	123 aa	39%		Cornifin (SPRR) family
Coronavirus_5	PF05528	2	35	82 aa	90%		Coronavirus gene 5 protein
Coronavirus_NS4	PF05780	4	36	74 aa	66%		Coronavirus nonstructural protein 4
Corona_3	PF04694	2	27	57 aa	87%		Coronavirus ORF3 protein
Corona_5a	PF06336	2	27	63 aa	86%		Coronavirus 5a protein
Corona_6B_7B	PF03262	2	60	203 aa	83%		Coronavirus 6B/7B protein
Corona_7	PF02398	2	39	90 aa	83%		Coronavirus protein 7
Corona_I	PF03187	3	32	199 aa	59%		Corona nucleocapsid I protein
Corona_M	PF01635	5	269	199 aa	42%		Coronavirus M matrix/glycoprotein
Corona_NS1	PF06145	8	11	29 aa	92%		Coronavirus nonstructural protein NS1
Corona_NS2	PF04753	2	33	107 aa	72%		Coronavirus non-structural protein NS2
Corona_NS2A	PF05213	2	24	240 aa	62%		Coronavirus NS2A protein
Corona_NS3b	PF03053	2	54	199 aa	56%		ORF3b coronavirus protein
Corona_NS4	PF03905	2	19	48 aa	70%		Coronavirus non-structural protein NS4
Corona_nucleoca	PF00937	9	373	339 aa	38%		Coronavirus nucleocapsid protein
Corona_RPol_N	PF06478	5	150	342 aa	65%		Coronavirus RPol N-terminus
Corona_S1	PF01600	8	928	345 aa	49%		Coronavirus S1 glycoprotein
Corona_S2	PF01601	8	500	466 aa	38%		Coronavirus S2 glycoprotein
Cortex-I_coil	PF09304	7	7	107 aa	55%		Cortexillin I, coiled coil
CotH	PF08757	16	82	329 aa	20%		CotH protein
COX1	PF00115	23	46020	232 aa	50%	1occ	Cytochrome C and Quinol oxidase polypeptide I
COX15-CtaA	PF02628	6	385	315 aa	24%		Cytochrome oxidase assembly protein
COX17	PF05051	7	59	62 aa	43%		Cytochrome C oxidase copper chaperone (COX17)
COX2	PF00116	32	12470	103 aa	56%	1occ	Cytochrome C oxidase subunit II, periplasmic domain
COX2-transmemb	PF09125	2	2	38 aa	100%	1ehk	Cytochrome C oxidase subunit II, transmembrane
COX2_TM	PF02790	32	10903	76 aa	52%	1occ	Cytochrome C oxidase subunit II, transmembrane domain
COX3	PF00510	21	3955	203 aa	51%	1occ	Cytochrome c oxidase subunit III
COX4	PF02936	10	94	129 aa	34%	2occ	Cytochrome c oxidase subunit IV
COX4_pro	PF03626	17	233	86 aa	38%	1occ	Prokaryotic Cytochrome C oxidase subunit IV
COX4_pro_2	PF07835	7	41	45 aa	34%	1qle	Bacterial aa3 type cytochrome c oxidase subunit IV
COX5A	PF02284	3	65	93 aa	51%	2occ	Cytochrome c oxidase subunit Va
COX5B	PF01215	4	92	84 aa	40%	1occ	Cytochrome c oxidase subunit Vb
COX5C	PF05799	6	14	59 aa	71%		Cytochrome c oxidase subunit Vc (COX5C)
COX6A	PF02046	6	69	90 aa	41%	2occ	Cytochrome c oxidase subunit VIa
COX6B	PF02297	3	70	72 aa	52%	2occ	Cytochrome oxidase c subunit VIb
COX6C	PF02937	4	31	71 aa	53%	2occ	Cytochrome c oxidase subunit VIc
COX7a	PF02238	8	73	50 aa	46%	1occ	Cytochrome c oxidase subunit VIIa
COX7B	PF05392	4	14	79 aa	63%	1ocz	Cytochrome C oxidase chain VIIB
COX7C	PF02935	4	45	61 aa	49%	2occ	Cytochrome c oxidase subunit VIIc
COX8	PF02285	6	39	43 aa	57%	1occ	Cytochrome oxidase c subunit VIII
COX9	PF09576	12	17	57 aa	47%		Cytochrome c oxidase subunit COX9
COXG	PF06240	15	176	140 aa	26%		Carbon monoxide dehydrogenase subunit G (CoxG)
CoxIIa	PF08113	2	2	34 aa	100%		Cytochrome c oxidase subunit IIa family
COX_ARM	PF06481	28	192	47 aa	31%	1cyw	COX Aromatic Rich Motif
CO_deh_flav_C	PF03450	17	677	94 aa	31%	1fo4	CO dehydrogenase flavoprotein C-terminal domain
CO_dh	PF02552	6	30	156 aa	33%		CO dehydrogenase beta subunit/acetyl-CoA synthase epsilon subunit
CP12	PF02672	4	80	55 aa	45%		CP12 domain
CP2	PF04516	8	84	214 aa	38%		CP2 transcription factor
CpcD	PF01383	22	151	55 aa	34%	1b33	CpcD/allophycocyanin linker domain
CPDase	PF07823	15	20	201 aa	23%		Cyclic phosphodiesterase-like protein
CpeS	PF09367	35	78	165 aa	29%		CpeS-like protein
CPL	PF08144	4	21	130 aa	37%		CPL (NUC119) domain
Cpl-7	PF08230	5	17	40 aa	49%		Cpl-7 lysozyme C-terminal domain
Cpn10	PF00166	48	1156	87 aa	43%	1lep	Chaperonin 10 Kd subunit
Cpn60_TCP1	PF00118	40	6001	293 aa	38%	1grl	TCP-1/cpn60 chaperonin family
Cps15	PF05205	2	5	125 aa	37%		Chromatin remodelling complex component cps15
CPSase_L_chain	PF00289	18	3127	114 aa	31%	1bnc	Carbamoyl-phosphate synthase L chain, N-terminal domain
CPSase_L_D2	PF02786	16	3385	192 aa	31%	1bnc	Carbamoyl-phosphate synthase L chain, ATP binding domain
CPSase_L_D3	PF02787	40	847	119 aa	38%	1bnc	Carbamoyl-phosphate synthetase large chain, oligomerisation domain
CPSase_sm_chain	PF00988	24	1070	133 aa	42%	1jdb	Carbamoyl-phosphate synthase small chain, CPSase domain
CPSF_A	PF03178	14	198	292 aa	22%		CPSF A subunit region
CPT	PF07931	7	21	167 aa	31%	1grq	Chloramphenicol phosphotransferase-like protein
CPW_WPC	PF09717	45	140	57 aa	30%		Plasmodium falciparum domain of unknown function (CPW_WPC)
CRA	PF06589	3	18	134 aa	79%		Circumsporozoite-related antigen (CRA)
CRAL_TRIO	PF00650	15	706	140 aa	21%	1aua	CRAL/TRIO domain
CRAL_TRIO_N	PF03765	14	387	71 aa	27%	1aua	CRAL/TRIO, N-terminus
CRAM_rpt	PF07016	2	73	24 aa	96%		Cysteine-rich, acidic integral membrane protein precursor (CRAM) repeat
CRA_rpt	PF07046	3	73	41 aa	88%		Cytoplasmic repetitive antigen (CRA) like repeat
CRCB	PF02537	12	653	114 aa	31%		CrcB-like protein
CRC_subunit	PF08624	15	38	101 aa	50%		Chromatin remodelling complex subunit
CreA	PF05981	9	147	145 aa	43%		CreA protein
Creatinase_N	PF01321	29	872	110 aa	22%	1chm	Creatinase/Prolidase N-terminal domain
Creatininase	PF02633	5	238	243 aa	25%	1v7z	Creatinine amidohydrolase
Creb_binding	PF09030	4	16	101 aa	59%		Creb binding
CreD	PF06123	10	84	415 aa	35%		Inner membrane protein CreD
CRF	PF00473	7	73	39 aa	51%	1goe	Corticotropin-releasing factor family
CRF-BP	PF05428	3	28	266 aa	52%		Corticotropin-releasing factor binding protein (CRF-BP)
Crinivirus_P26	PF07416	2	5	227 aa	99%		Crinivirus P26 protein
Crisp	PF08562	26	83	52 aa	52%		Crisp
CRISPR_assoc	PF08798	20	66	221 aa	26%		CRISPR associated protein
CRISPR_Cse1	PF09481	47	60	465 aa	21%		CRISPR-associated protein Cse1 (CRISPR_cse1)
CRISPR_Cse2	PF09485	53	64	143 aa	21%		CRISPR-associated protein Cse2 (CRISPR_cse2)
Crl	PF07417	4	37	128 aa	54%		Transcriptional regulator Crl
CRM1_C	PF08767	14	90	281 aa	38%		CRM1 C terminal
Cro	PF09048	5	7	59 aa	59%		Cro
Crp	PF00325	12	1189	31 aa	33%	1cgp	Bacterial regulatory proteins, crp family
CRPA	PF05745	5	11	134 aa	51%		Chlamydia 15 kDa cysteine-rich outer membrane protein (CRPA)
CRPV_capsid	PF08762	7	49	174 aa	37%	1b35	CRPV capsid protein like
CRS1_YhbY	PF01985	52	414	83 aa	31%	1jo0	CRS1 / YhbY domain
CRT-like	PF08627	3	5	124 aa	66%		CRT-like
CRT10	PF08728	7	7	705 aa	20%		CRT10
CrtC	PF07143	7	41	282 aa	34%		Hydroxyneurosporene synthase (CrtC)
Crust_neurohorm	PF01147	10	168	68 aa	43%	1j0t	Crustacean CHH/MIH/GIH neurohormone family
Crust_neuro_H	PF03858	2	32	39 aa	61%		Crustacean neurohormone H
CryBP1	PF07029	3	18	155 aa	46%		CryBP1 protein
Crystall	PF00030	37	635	79 aa	35%	4gcr	Beta/Gamma crystallin
Crystallin	PF00525	13	119	54 aa	67%		Alpha crystallin A chain, N terminal
CS	PF04969	100	551	75 aa	20%	1rl1	CS domain
CsbD	PF05532	21	392	52 aa	33%	1jyg	CsbD-like
CSD	PF00313	40	2172	66 aa	43%	1mjc	'Cold-shock' DNA-binding domain
Cse1	PF08506	15	64	285 aa	37%		Cse1
CSE2	PF07544	5	28	83 aa	31%		RNA polymerase II transcription mediator
CSF-1	PF05337	7	32	260 aa	41%		Macrophage colony stimulating factor-1 (CSF-1)
CsgG	PF03783	6	113	220 aa	30%		Curli production assembly/transport component CsgG
CsiD	PF08943	9	27	295 aa	65%		CsiD
CsoSCA	PF08936	13	35	458 aa	56%		Carboxysome Shell Carbonic Anhydrase
CsrA	PF02599	33	254	60 aa	52%		Global regulator protein family
CST-I	PF06002	3	33	267 aa	66%	1ro8	Alpha-2,3-sialyltransferase (CST-I)
CstA	PF02554	7	317	378 aa	42%		Carbon starvation protein CstA
CT20	PF07904	9	33	93 aa	33%		CT20 family
CtaG_Cox11	PF04442	13	246	142 aa	40%		Cytochrome c oxidase assembly protein CtaG / Cox11
Ctf8	PF09696	26	35	123 aa	29%		Ctf8
CTF_NFI	PF00859	3	102	220 aa	58%		CTF/NF-I family transcription modulation region
CTI	PF06934	6	52	683 aa	48%		Fatty acid cis/trans isomerase (CTI)
CtnDOT_TraJ	PF07863	7	22	65 aa	49%		Homologues of TraJ from Bacteroides conjugative transposon
CTNNB1_binding	PF08347	13	90	189 aa	47%		N-terminal CTNNB1 binding
CTP_synth_N	PF06418	62	736	261 aa	55%		CTP synthase N-terminus
CTP_transf_1	PF01148	48	912	251 aa	21%		Cytidylyltransferase family
CTP_transf_2	PF01467	65	2025	133 aa	20%	1coz	Cytidylyltransferase
CTP_transf_3	PF02348	20	687	183 aa	28%	1h7t	Cytidylyltransferase
Ctr	PF04145	21	209	141 aa	23%		Ctr copper transporter family
CtsR	PF05848	11	104	149 aa	47%		Firmicute transcriptional repressor of class III stress genes (CtsR)
CTV_P13	PF06922	3	16	110 aa	92%		Citrus tristeza virus P13 protein
CTV_P23	PF04808	3	99	205 aa	91%		Citrus tristeza virus (CTV) P23 protein
CTV_P33	PF07184	2	113	203 aa	88%		Citrus tristeza virus P33 protein
CTV_P6	PF06706	2	9	51 aa	94%		Citrus tristeza virus 6-kDa protein
CTX_RstB	PF07459	3	11	116 aa	77%		CTX phage RstB protein
Cu-oxidase	PF00394	72	2869	137 aa	38%	1aoz	Multicopper oxidase
Cu-oxidase_2	PF07731	128	1293	126 aa	22%	1aoz	Multicopper oxidase
Cu-oxidase_3	PF07732	124	1875	88 aa	35%	1aoz	Multicopper oxidase
Cu2_monooxygen	PF01082	13	98	137 aa	30%	1phm	Copper type II ascorbate-dependent monooxygenase, N-terminal domain
Cu2_monoox_C	PF03712	11	99	144 aa	33%	1phm	Copper type II ascorbate-dependent monooxygenase, C-terminal domain
CUB	PF00431	29	1942	102 aa	28%	1sfp	CUB domain
CUB_2	PF02408	29	81	114 aa	21%		CUB-like domain
Cucumo_2B	PF03263	3	45	103 aa	71%		Cucumovirus protein 2B
Cucumo_coat	PF00760	4	318	189 aa	83%	1f15	Cucumovirus coat protein
CUE	PF02845	23	231	42 aa	24%	1otr	CUE domain
Cullin	PF00888	49	404	474 aa	21%	1ldj	Cullin family
Cupin_1	PF00190	225	1157	142 aa	19%	2phl	Cupin
Cupin_2	PF07883	156	2971	70 aa	20%	1vj2	Cupin domain
Cupin_3	PF05899	33	325	74 aa	26%	1o5u	Protein of unknown function (DUF861)
Cupin_4	PF08007	26	243	288 aa	29%		Cupin superfamily protein
Cupin_5	PF06172	20	195	136 aa	38%		Cupin superfamily (DUF985)
Curlin_rpt	PF07012	22	549	32 aa	32%		Curlin associated repeat
Curto_V2	PF07325	2	8	118 aa	85%		Curtovirus V2 protein
Curto_V3	PF07436	2	7	87 aa	89%		Curtovirus V3 protein
CUT	PF02376	10	123	86 aa	39%		CUT domain
Cut8	PF08559	15	25	226 aa	32%		Cut8
CutA1	PF03091	13	288	97 aa	35%	1p1l	CutA1 divalent ion tolerance protein
CutC	PF03932	8	212	199 aa	37%		CutC family
Cuticle_1	PF08140	16	46	38 aa	48%		Crustacean cuticle protein repeat
Cuticle_2	PF08184	3	3	59 aa	96%		Cuticle protein 7 isoform family
Cutinase	PF01083	23	235	187 aa	30%	1cex	Cutinase
Cu_amine_oxid	PF01179	15	228	378 aa	32%	1oac	Copper amine oxidase, enzyme domain
Cu_amine_oxidN1	PF07833	13	167	86 aa	27%	1spu	Copper amine oxidase N-terminal domain
Cu_amine_oxidN2	PF02727	17	180	79 aa	26%	1oac	Copper amine oxidase, N2 domain
Cu_amine_oxidN3	PF02728	18	158	100 aa	22%	1oac	Copper amine oxidase, N3 domain
Cu_bind_like	PF02298	26	248	78 aa	34%	2cbp	Plastocyanin-like domain
CVNH	PF08881	26	55	103 aa	29%		CVNH domain
cwf18	PF08315	8	44	144 aa	31%		cwf18 pre-mRNA splicing factor
cwf21	PF08312	21	63	47 aa	40%		cwf21
CwfJ_C_1	PF04677	8	105	127 aa	29%		Protein similar to CwfJ C-terminus 1
CwfJ_C_2	PF04676	8	92	92 aa	29%		Protein similar to CwfJ C-terminus 2
Cwf_Cwc_15	PF04889	5	64	213 aa	43%		Cwf15/Cwc15 cell cycle control protein
CW_binding_1	PF01473	213	1825	19 aa	42%	1hcx	Putative cell wall binding repeat
CW_binding_2	PF04122	12	403	86 aa	29%		Putative cell wall binding repeat 2
CX	PF01705	9	34	59 aa	35%		CX module
CXC	PF03638	14	291	41 aa	47%		Tesmin/TSO1-like CXC domain
CXCXC	PF03128	116	394	14 aa	31%		CXCXC repeat
CxxC_CxxC_SSSS	PF09723	165	291	41 aa	37%		Putative regulatory protein (CxxC_CxxC_SSSS)
Cyanate_lyase	PF02560	4	107	72 aa	56%	1dw9	Cyanate lyase C-terminal domain
CybS	PF05328	8	62	144 aa	31%		CybS
Cyc-maltodext_N	PF09087	10	25	89 aa	36%	1h3g	Cyclomaltodextrinase, N-terminal
Cyclase	PF04199	25	384	207 aa	25%		Putative cyclase
Cyclase_polyket	PF04673	9	36	95 aa	50%		Polyketide synthesis cyclase
Cyclin	PF08613	11	238	146 aa	25%		Cyclin
Cyclin_C	PF02984	140	766	113 aa	22%	1vin	Cyclin, C-terminal domain
Cyclin_N	PF00134	133	1387	115 aa	26%	1vin	Cyclin, N-terminal domain
Cyclotide	PF03784	4	81	29 aa	59%	1kal	Cyclotide family
Cyd_oper_YbgE	PF09600	19	44	81 aa	44%		Cyd operon protein YbgE (Cyd_oper_YbgE)
Cypo_polyhedrin	PF05865	2	12	248 aa	96%		Cypovirus polyhedrin protein
Cystatin	PF00031	44	606	82 aa	21%	1cew	Cystatin domain
Cys_knot	PF00007	24	576	87 aa	36%	1hcn	Cystine-knot domain
Cys_Met_Meta_PP	PF01053	30	1785	370 aa	34%	1cs1	Cys/Met metabolism PLP-dependent enzyme
Cys_rich_FGFR	PF00839	25	233	58 aa	25%		Cysteine rich repeat
Cyt-b5	PF00173	213	1287	81 aa	27%	3b5c	Cytochrome b5-like Heme/Steroid binding domain
Cytadhesin_P30	PF07271	3	25	216 aa	75%		Cytadhesin P30/P32
CytB6-F_Fe-S	PF08802	15	72	37 aa	45%		Cytochrome B6-F complex Fe-S subunit
CYTH	PF01928	56	489	179 aa	20%		CYTH domain
Cytidylate_kin	PF02224	14	520	155 aa	39%	2cmk	Cytidylate kinase
Cytochrom_B558a	PF05038	4	21	177 aa	74%		Cytochrome Cytochrome b558 alpha-subunit
Cytochrom_B559	PF00283	8	780	28 aa	54%		Cytochrome b559, alpha (gene psbE) and beta (gene psbF)subunits
Cytochrom_B559a	PF00284	14	405	39 aa	83%		Lumenal portion of Cytochrome b559, alpha (gene psbE) subunit
Cytochrom_B561	PF03188	11	144	198 aa	26%		Cytochrome b561
Cytochrom_B562	PF07361	8	47	103 aa	38%	1qq3	Cytochrome b562
Cytochrom_B_C	PF00032	9	27866	88 aa	75%	1bcc	Cytochrome b(C-terminal)/b6/petD
Cytochrom_B_N	PF00033	8	43650	153 aa	69%	3bcc	Cytochrome b(N-terminal)/b6/petB
Cytochrom_C	PF00034	34	3008	83 aa	21%	1cry	Cytochrome c
Cytochrom_C1	PF02167	14	306	212 aa	34%	3bcc	Cytochrome C1 family
Cytochrom_C552	PF02335	3	124	398 aa	41%	1qdb	Cytochrome c552
Cytochrom_CIII	PF02085	9	46	94 aa	29%	2cdv	Class III cytochrome C family
Cytochrom_C_2	PF01322	15	128	121 aa	29%	1cgo	Cytochrome C'
Cytochrom_C_asm	PF01578	39	1255	207 aa	22%		Cytochrome C assembly protein
Cytochrom_D1	PF02239	8	2098	238 aa	58%	1nir	Cytochrome D1 heme domain
Cytochrom_NNT	PF03264	15	283	162 aa	42%		NapC/NirT cytochrome c family, N-terminal region
CytoC_RC	PF02276	10	40	244 aa	41%	1prc	Photosynthetic reaction centre cytochrome C subunit
Cytokin-bind	PF09265	19	54	243 aa	36%	1w1o	Cytokinin dehydrogenase 1, FAD and cytokinin binding
Cytomega_gL	PF01801	5	37	260 aa	55%		Cytomegalovirus glycoprotein L
Cytomega_TRL10	PF06084	5	14	170 aa	89%		Cytomegalovirus TRL10 protein
Cytomega_UL20A	PF05984	2	3	99 aa	57%		Cytomegalovirus UL20A protein
Cytomega_UL84	PF06284	4	9	528 aa	70%		Cytomegalovirus UL84 protein
Cytomega_US3	PF05963	2	29	177 aa	87%		Cytomegalovirus US3 protein
Cytotoxic	PF09000	9	15	86 aa	56%		Cytotoxic
Cyto_heme_lyase	PF01265	6	86	220 aa	39%		Cytochrome c/c1 heme lyase
Cyto_ox_2	PF02322	15	521	334 aa	34%		Cytochrome oxidase subunit II
C_GCAxxG_C_C	PF09719	48	71	121 aa	27%		Putative redox-active protein (C_GCAxxG_C_C)
C_tripleX	PF02363	168	1263	16 aa	31%		Cysteine rich repeat

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