Pfam 22.0 :: Browse Families

Pfam 22.0 :: Browse Families - A
Browse available alignments and models

Browse Pfam

Available sections: Numbers A B C D E F G H I J K L M N O P Q R S T U V W X Y Z Top twenty families

Name	acc number	#seed	#full	av. len	av. %id	structure	Description
A
A-2_8-polyST	PF07388	3	19	271 aa	44%		Alpha-2,8-polysialyltransferase (POLYST)
A1_Propeptide	PF07966	85	304	28 aa	35%		A1 Propeptide
A2L_zn_ribbon	PF08792	14	49	32 aa	50%		A2L zinc ribbon domain
A2M	PF00207	57	347	93 aa	37%	1c3d	Alpha-2-macroglobulin family
A2M_comp	PF07678	56	393	211 aa	38%	1bv8	A-macroglobulin complement component
A2M_N	PF01835	53	506	264 aa	20%	1c3d	Alpha-2-macroglobulin family N-terminal region
A2M_N_2	PF07703	70	462	143 aa	22%		Alpha-2-macroglobulin family N-terminal region
A2M_recep	PF07677	51	325	89 aa	36%	1bv8	A-macroglobulin receptor
A4_EXTRA	PF02177	5	98	152 aa	63%	1mwp	Amyloid A4 extracellular domain
AAA	PF00004	229	9438	166 aa	24%	1nsf	ATPase family associated with various cellular activities (AAA)
AAA_2	PF07724	141	3294	156 aa	34%	1nsf	ATPase family associated with various cellular activities (AAA)
AAA_3	PF07726	55	768	123 aa	53%	1nsf	ATPase family associated with various cellular activities (AAA)
AAA_4	PF04326	65	390	95 aa	20%		Divergent AAA domain
AAA_5	PF07728	35	1886	129 aa	21%	1nsf	ATPase family associated with various cellular activities (AAA)
AAA_PrkA	PF08298	7	193	353 aa	51%		PrkA AAA domain
AalphaY_MDB	PF04611	5	5	147 aa	47%		Mating type protein A alpha Y mating type dependent binding region
AAL_decarboxy	PF03306	8	157	214 aa	36%		Alpha-acetolactate decarboxylase
AAR2	PF05282	5	58	312 aa	29%		AAR2 protein
AARP2CN	PF08142	29	134	81 aa	34%		AARP2CN (NUC121) domain
AAT	PF03417	18	116	217 aa	22%		Acyl-coenzyme A:6-aminopenicillanic acid acyl-transferase
AATase	PF07247	10	61	455 aa	18%		Alcohol acetyltransferase
AA_kinase	PF00696	107	3205	237 aa	19%	1e19	Amino acid kinase family
AA_permease	PF00324	27	4898	355 aa	18%		Amino acid permease
AA_permease_N	PF08403	7	52	64 aa	47%		Amino acid permease N-terminal
Aa_trans	PF01490	26	1285	330 aa	17%		Transmembrane amino acid transporter protein
ABA_WDS	PF02496	18	83	73 aa	71%		ABA/WDS induced protein
ABC-3	PF00950	16	904	252 aa	28%		ABC 3 transport family
ABC1	PF03109	32	938	120 aa	32%		ABC1 family
ABC2_membrane	PF01061	303	3905	195 aa	14%		ABC-2 type transporter
ABC_membrane	PF00664	70	6419	257 aa	14%	1pf4	ABC transporter transmembrane region
ABC_membrane_2	PF06472	26	338	268 aa	23%		ABC transporter transmembrane region 2
ABC_sub_bind	PF04392	9	211	279 aa	33%		ABC transporter substrate binding protein
ABC_tran	PF00005	64	47590	185 aa	26%	1b0u	ABC transporter
AbfB	PF05270	11	48	136 aa	41%		Alpha-L-arabinofuranosidase B (ABFB)
ABG_transport	PF03806	9	140	468 aa	43%		AbgT putative transporter family
Abhydrolase_1	PF00561	48	9801	174 aa	17%	1ede	alpha/beta hydrolase fold
Abhydrolase_2	PF02230	14	630	204 aa	22%	1auo	Phospholipase/Carboxylesterase
Abhydrolase_3	PF07859	133	1618	193 aa	28%		alpha/beta hydrolase fold
Abhydrolase_4	PF08386	38	185	102 aa	25%		TAP-like protein
Abhydro_lipase	PF04083	13	251	68 aa	34%	1hlg	ab-hydrolase associated lipase region
Abi	PF02517	46	1406	96 aa	22%		CAAX amino terminal protease family
Abi_2	PF07751	19	93	212 aa	23%		Abi-like protein
Abi_HHR	PF07815	6	57	74 aa	65%		Abl-interactor HHR
ABM	PF03992	116	1129	63 aa	18%	1n5t	Antibiotic biosynthesis monooxygenase
Abp2	PF09441	5	11	169 aa	58%		ARS binding protein 2
ACBP	PF00887	14	358	79 aa	37%	1aca	Acyl CoA binding protein
ACCA	PF03255	15	465	137 aa	49%		Acetyl co-enzyme A carboxylase carboxyltransferase alpha subunit
ACC_central	PF08326	20	120	589 aa	33%		Acetyl-CoA carboxylase, central region
AceK	PF06315	5	94	553 aa	46%		Isocitrate dehydrogenase kinase/phosphatase (AceK)
Acetate_kinase	PF00871	12	729	341 aa	38%	1g99	Acetokinase family
AcetDehyd-dimer	PF09290	37	169	144 aa	62%	1nvm	Prokaryotic acetaldehyde dehydrogenase, dimerisation
Acetone_carb_G	PF08882	9	37	107 aa	44%		Acetone carboxylase gamma subunit
AcetylCoA_hydro	PF02550	5	306	198 aa	26%		Acetyl-CoA hydrolase/transferase N-terminal domain
Acetyltransf_1	PF00583	243	13427	82 aa	18%	1bo4	Acetyltransferase (GNAT) family
Acetyltransf_2	PF00797	33	260	236 aa	26%	1e2t	N-acetyltransferase
AChE_tetra	PF08674	7	37	37 aa	70%		Acetylcholinesterase tetramerisation domain
Acid_phosphat_A	PF00328	96	747	345 aa	18%	1rpa	Histidine acid phosphatase
Acid_phosphat_B	PF03767	31	213	191 aa	24%	1n9k	HAD superfamily, subfamily IIIB (Acid phosphatase)
ACN9	PF05882	5	44	92 aa	41%		ACN9 family
Aconitase	PF00330	11	1659	449 aa	32%	1aco	Aconitase family (aconitate hydratase)
Aconitase_2_N	PF06434	12	253	350 aa	60%	1l5j	Aconitate hydratase 2 N-terminus
Aconitase_C	PF00694	18	1372	115 aa	36%	1aco	Aconitase C-terminal domain
ACOX	PF01756	40	214	176 aa	23%	1is2	Acyl-CoA oxidase
Acp26Ab	PF05777	4	14	90 aa	94%		Drosophila accessory gland-specific peptide 26Ab (Acp26Ab)
ACP53EA	PF06313	2	25	116 aa	52%		Drosophila ACP53EA protein
ACPS	PF01648	43	1009	66 aa	27%	1qr0	4'-phosphopantetheinyl transferase superfamily
ACP_syn_III	PF08545	170	956	77 aa	37%		3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III
ACP_syn_III_C	PF08541	187	1070	89 aa	32%		3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III C terminal
ACR_tran	PF00873	16	2961	966 aa	26%	1oy6	AcrB/AcrD/AcrF family
ACT	PF01842	180	5921	64 aa	16%	1psd	ACT domain
Act-Frag_cataly	PF09192	7	15	284 aa	29%	1cja	Actin-fragmin kinase, catalytic
ActA	PF05058	6	725	209 aa	50%		ActA Protein
ACTH_domain	PF00976	2	287	38 aa	80%		Corticotropin ACTH domain
Actin	PF00022	30	4720	225 aa	54%	2btf	Actin
Activin_recp	PF01064	29	226	82 aa	25%	1tbi	Activin types I and II receptor domain
Acyl-ACP_TE	PF01643	30	191	236 aa	30%		Acyl-ACP thioesterase
Acyl-CoA_dh_1	PF00441	60	5125	145 aa	25%	1buc	Acyl-CoA dehydrogenase, C-terminal domain
Acyl-CoA_dh_2	PF08028	38	513	133 aa	23%		Acyl-CoA dehydrogenase, C-terminal domain
Acyl-CoA_dh_M	PF02770	497	4843	52 aa	36%	1buc	Acyl-CoA dehydrogenase, middle domain
Acyl-CoA_dh_N	PF02771	10	3043	99 aa	27%	1buc	Acyl-CoA dehydrogenase, N-terminal domain
Acylphosphatase	PF00708	5	645	74 aa	37%	1aps	Acylphosphatase
Acyltransferase	PF01553	58	2622	128 aa	21%	1k30	Acyltransferase
Acyl_CoA_thio	PF02551	9	661	113 aa	28%	1c8u	Acyl-CoA thioesterase
Acyl_transf_1	PF00698	13	2803	264 aa	30%	1mla	Acyl transferase domain
Acyl_transf_2	PF02273	4	17	291 aa	70%	1tht	Acyl transferase
Acyl_transf_3	PF01757	62	1464	333 aa	17%		Acyltransferase family
ADAM_CR	PF08516	70	305	110 aa	33%		ADAM cysteine-rich
ADAM_spacer1	PF05986	23	161	109 aa	31%		ADAM-TS Spacer 1
Adaptin_N	PF01602	33	824	443 aa	18%	1gw5	Adaptin N terminal region
Adap_comp_sub	PF00928	50	414	268 aa	27%	1bxx	Adaptor complexes medium subunit family
Ada_Zn_binding	PF02805	27	255	65 aa	48%	1adn	Metal binding domain of Ada
ADC	PF06314	8	79	235 aa	40%		Acetoacetate decarboxylase (ADC)
ADC_lyase	PF02618	37	480	281 aa	31%		Aminodeoxychorismate lyase
Adenine_glyco	PF03352	9	412	166 aa	43%	1nku	Methyladenine glycosylase
Adenosine_kin	PF04008	7	65	153 aa	56%	1rlh	Adenosine specific kinase
Adeno_100	PF02438	12	59	590 aa	59%		Late 100kD protein
Adeno_52K	PF03052	10	63	302 aa	58%		Adenoviral protein 52K
Adeno_E1A	PF02703	7	115	197 aa	47%		Early E1A protein
Adeno_E1B_19K	PF01691	9	56	155 aa	43%		Adenovirus E1B 19K protein / small t-antigen
Adeno_E1B_55K	PF01696	10	62	330 aa	53%		Adenovirus EB1 55K protein / large t-antigen
Adeno_E1B_55K_N	PF04623	5	57	67 aa	44%		Adenovirus E1B protein N-terminus
Adeno_E3	PF06040	5	29	136 aa	66%		Adenovirus E3 protein
Adeno_E3A	PF05248	6	44	105 aa	66%		Adenovirus E3A
Adeno_E3B	PF03376	6	43	89 aa	62%		Adenovirus E3B protein
Adeno_E3_14_5	PF04834	6	59	104 aa	57%		Early E3 14.5 kDa protein
Adeno_E3_15_3	PF03307	6	51	119 aa	68%		Adenovirus 15.3kD protein in E3 region
Adeno_E3_CR1	PF02440	6	89	76 aa	41%		Adenovirus E3 region protein CR1
Adeno_E3_CR2	PF02439	5	65	45 aa	50%		Adenovirus E3 region protein CR2
Adeno_E4	PF05385	5	33	102 aa	58%		Mastadenovirus early E4 13 kDa protein
Adeno_E4_34	PF04528	12	51	146 aa	57%		Adenovirus early E4 34 kDa protein conserved region
Adeno_E4_ORF3	PF06931	5	33	108 aa	69%		Mastadenovirus E4 ORF3 protein
Adeno_GP19K	PF04881	3	42	139 aa	55%		Adenovirus GP19K
Adeno_hexon	PF01065	13	973	221 aa	42%	1dhx	Hexon, adenovirus major coat protein, N-terminal domain
Adeno_hexon_C	PF03678	13	320	202 aa	77%	1dhx	Hexon, adenovirus major coat protein, C-terminal domain
Adeno_IVa2	PF02456	8	59	350 aa	63%		Adenovirus IVa2 protein
Adeno_knob	PF00541	9	190	179 aa	40%	1knb	Adenoviral fibre protein (knob domain)
Adeno_Penton_B	PF01686	9	80	481 aa	68%		Adenovirus penton base protein
Adeno_PIX	PF03955	11	67	108 aa	58%		Adenovirus hexon-associated protein (IX)
Adeno_PV	PF03910	8	42	343 aa	59%		Adenovirus minor core protein PV
Adeno_PVIII	PF01310	7	86	200 aa	55%		Adenovirus hexon associated protein, protein VIII
Adeno_PX	PF05829	15	64	43 aa	69%		Adenovirus late L2 mu core protein (Protein X)
Adeno_shaft	PF00608	63	800	30 aa	27%	1qiu	Adenoviral fibre protein (repeat/shaft region)
Adeno_terminal	PF02459	8	61	554 aa	63%		Adenoviral DNA terminal protein
Adeno_VII	PF03228	9	54	122 aa	57%		Adenoviral core protein VII
Adenylate_cycl	PF01295	5	161	567 aa	65%		Adenylate cyclase, class-I
Adenylsucc_synt	PF00709	114	705	405 aa	46%	1ade	Adenylosuccinate synthetase
Adenyl_transf	PF04439	6	72	254 aa	40%		Streptomycin adenylyltransferase
Adhes-Ig_like	PF09085	5	13	107 aa	70%	1gsm	Adhesion molecule, immunoglobulin-like
Adhesin_Dr	PF04619	6	11	128 aa	48%		Dr-family adhesin
Adhesin_P1	PF03257	8	22	87 aa	64%		Mycoplasma adhesin P1
ADH_N	PF08240	93	7754	99 aa	27%		Alcohol dehydrogenase GroES-like domain
adh_short	PF00106	230	18503	157 aa	24%	1hdc	short chain dehydrogenase
ADH_zinc_N	PF00107	108	8087	136 aa	22%	1hdx	Zinc-binding dehydrogenase
Adipokin_hormo	PF06377	2	14	62 aa	44%		Adipokinetic hormone
ADK	PF00406	23	1288	162 aa	38%	1ake	Adenylate kinase
ADK_lid	PF05191	36	764	35 aa	50%	1ake	Adenylate kinase, active site lid
AdoHcyase	PF05221	9	539	404 aa	49%	1b3r	S-adenosyl-L-homocysteine hydrolase
AdoHcyase_NAD	PF00670	16	535	158 aa	54%	1b3r	S-adenosyl-L-homocysteine hydrolase, NAD binding domain
AdoMetDC_leader	PF08132	9	13	52 aa	86%		S-adenosyl-l-methionine decarboxylase leader peptide
AdoMet_dc	PF02675	22	236	113 aa	36%		S-adenosylmethionine decarboxylase
AdoMet_Synthase	PF01941	17	78	383 aa	42%		S-adenosylmethionine synthetase (AdoMet synthetase)
ADP_PFK_GK	PF04587	9	47	386 aa	28%	1l2l	ADP-specific Phosphofructokinase/Glucokinase conserved region
ADP_ribosyl_GH	PF03747	20	333	281 aa	21%	1t5j	ADP-ribosylglycohydrolase
Adrenomedullin	PF02039	2	15	130 aa	53%		Adrenomedullin
Ad_cyc_g-alpha	PF08509	13	30	53 aa	29%		Adenylate cyclase G-alpha binding domain
Aegerolysin	PF06355	12	35	114 aa	33%		Aegerolysin
Aerolysin	PF01117	6	133	191 aa	62%	1pre	Aerolysin toxin
AF-4	PF05110	8	62	567 aa	34%		AF-4 proto-oncoprotein
AfaD	PF05775	8	25	137 aa	49%		Enterobacteria AfaD invasin protein
AFG1_ATPase	PF03969	8	397	354 aa	35%		AFG1-like ATPase
AflR	PF08493	4	62	249 aa	64%		Aflatoxin regulatory protein
AFOR_C	PF01314	9	194	360 aa	27%	1aor	Aldehyde ferredoxin oxidoreductase, domains 2 & 3
AFOR_N	PF02730	12	210	196 aa	36%	1aor	Aldehyde ferredoxin oxidoreductase, N-terminal domain
AFP	PF02420	9	542	11 aa	44%	1ezg	Insect antifreeze protein repeat
AfsA	PF03756	9	31	77 aa	29%		A-factor biosynthesis repeat
AFT	PF08731	8	11	109 aa	42%		Transcription factor AFT
Ag332	PF04671	43	326	21 aa	45%		Erythrocyte membrane-associated giant protein antigen 332
Agenet	PF05641	34	146	67 aa	28%		Agenet domain
Agglutinin	PF07468	2	9	145 aa	52%	1jlx	Agglutinin
Agouti	PF05039	5	86	105 aa	51%	1hyk	Agouti protein
AgrB	PF04647	11	116	168 aa	34%		Accessory gene regulator B
AgrD	PF05931	19	48	45 aa	43%		Staphylococcal AgrD protein
Agro_virD5	PF04730	4	8	726 aa	67%		Agrobacterium VirD5 protein
AGTRAP	PF06396	2	9	156 aa	67%		Angiotensin II, type I receptor-associated protein (AGTRAP)
Aha1_N	PF09229	41	95	128 aa	27%	1usu	Activator of Hsp90 ATPase, N-terminal
AhpC-TSA	PF00578	129	2968	121 aa	24%	1prx	AhpC/TSA family
AHS1	PF02682	4	369	207 aa	30%		Allophanate hydrolase subunit 1
AHS2	PF02626	5	386	281 aa	33%		Allophanate hydrolase subunit 2
AHSA1	PF08327	118	617	67 aa	21%		Activator of Hsp90 ATPase homolog 1-like protein
AHSP	PF09236	2	5	88 aa	74%	1w09	Alpha-haemoglobin stabilising protein
AICARFT_IMPCHas	PF01808	9	666	293 aa	42%	1m9n	AICARFT/IMPCHase bienzyme
AIG1	PF04548	32	209	190 aa	28%		AIG1 family
AIG2	PF06094	99	392	102 aa	21%		AIG2-like family
Ail_Lom	PF06316	2	118	182 aa	40%	1qj9	Enterobacterial Ail/Lom protein
AIP3	PF03915	3	26	407 aa	39%		Actin interacting protein 3
AIRC	PF00731	13	636	154 aa	50%	1d7a	AIR carboxylase
AIRS	PF00586	54	2274	149 aa	22%	1cli	AIR synthase related protein, N-terminal domain
AIRS_C	PF02769	172	2830	154 aa	18%	1cli	AIR synthase related protein, C-terminal domain
AKAP95	PF04988	3	34	359 aa	37%		A-kinase anchoring protein 95 (AKAP95)
AKAP_110	PF05716	4	31	459 aa	50%		A-kinase anchor protein 110 kDa (AKAP 110)
ALAD	PF00490	10	644	307 aa	49%	1aw5	Delta-aminolevulinic acid dehydratase
AlaDh_PNT_C	PF01262	100	793	160 aa	36%	1say	Alanine dehydrogenase/PNT, C-terminal domain
AlaDh_PNT_N	PF05222	42	781	131 aa	36%	1say	Alanine dehydrogenase/PNT, N-terminal domain
Ala_racemase_C	PF00842	45	658	125 aa	36%	1sft	Alanine racemase, C-terminal domain
Ala_racemase_N	PF01168	60	1384	217 aa	22%	1sft	Alanine racemase, N-terminal domain
Alb1	PF09135	5	6	162 aa	45%		Alb1
Alba	PF01918	29	143	71 aa	27%	1h0y	Alba
Albicidin_res	PF05583	4	34	75 aa	39%		Albicidin resistance domain
Albumin_I	PF08027	4	35	93 aa	60%		Albumin I
Aldedh	PF00171	121	6798	398 aa	28%	1ag8	Aldehyde dehydrogenase family
Aldolase	PF01081	5	467	194 aa	33%	1fwr	KDPG and KHG aldolase
Aldolase_II	PF00596	51	1115	198 aa	21%	1fua	Class II Aldolase and Adducin N-terminal domain
Aldose_epim	PF01263	67	907	266 aa	20%	1jov	Aldose 1-epimerase
Aldo_ket_red	PF00248	67	4059	279 aa	24%	1ads	Aldo/keto reductase family
Ald_Xan_dh_C	PF01315	30	1067	106 aa	33%	1alo	Aldehyde oxidase and xanthine dehydrogenase, a/b hammerhead domain
Ald_Xan_dh_C2	PF02738	30	2131	268 aa	18%	1alo	Aldehyde oxidase and xanthine dehydrogenase, molybdopterin binding domain
ALF	PF03752	24	48	46 aa	29%		Short repeats of unknown function
Alg14	PF08660	39	131	152 aa	31%		Oligosaccharide biosynthesis protein Alg14 like
ALG3	PF05208	8	54	345 aa	41%		ALG3 protein
Alg6_Alg8	PF03155	9	108	419 aa	34%		ALG6, ALG8 glycosyltransferase family
Alginate_lyase	PF05426	4	30	340 aa	49%	1qaz	Alginate lyase
Alginate_lyase2	PF08787	30	70	227 aa	24%	1uai	Alginate lyase
AlkA_N	PF06029	11	135	119 aa	34%	1diz	AlkA N-terminal domain
Alk_phosphatase	PF00245	10	544	354 aa	31%	1alk	Alkaline phosphatase
Allantoicase	PF03561	13	232	142 aa	40%	1sg3	Allantoicase repeat
Allatostatin	PF05953	21	249	11 aa	59%		Allatostatin
Allene_ox_cyc	PF06351	7	26	170 aa	67%		Allene oxide cyclase
Allexi_40kDa	PF05549	7	11	330 aa	41%		Allexivirus 40kDa protein
Alliinase_C	PF04864	10	44	313 aa	55%	1lk9	Allinase
ALO	PF04030	36	182	237 aa	24%		D-arabinono-1,4-lactone oxidase
Alpha-2-MRAP_C	PF06401	5	30	206 aa	57%		Alpha-2-macroglobulin RAP, C-terminal domain
Alpha-2-MRAP_N	PF06400	4	28	114 aa	61%	1lre	Alpha-2-macroglobulin RAP, N-terminal domain
Alpha-amylase	PF00128	54	4103	289 aa	21%	1ppi	Alpha amylase, catalytic domain
Alpha-amylase_C	PF02806	260	947	88 aa	26%	1ppi	Alpha amylase, C-terminal all-beta domain
Alpha-amylase_N	PF02903	11	100	113 aa	31%	1sma	Alpha amylase, N-terminal ig-like domain
Alpha-amyl_C	PF09071	5	6	66 aa	40%	1eh9	Alpha-amylase, C terminal
Alpha-amyl_C2	PF07821	17	75	60 aa	48%		Alpha-amylase C-terminal beta-sheet domain
Alpha-L-AF_C	PF06964	25	164	195 aa	25%	1pz2	Alpha-L-arabinofuranosidase C-terminus
Alpha-mann_mid	PF09261	87	262	78 aa	30%	1o7d	Alpha mannosidase, middle domain
AlphaC_N	PF08829	5	30	184 aa	71%		Alpha C protein N terminal
Alpha_adaptinC2	PF02883	24	250	113 aa	20%	1qtp	Adaptin C-terminal domain
Alpha_adaptin_C	PF02296	4	45	113 aa	50%	1qtp	Alpha adaptin AP2, C-terminal domain
Alpha_E1_glycop	PF01589	8	451	272 aa	41%	1rer	Alphavirus E1 glycoprotein
Alpha_E2_glycop	PF00943	11	585	248 aa	39%		Alphavirus E2 glycoprotein
Alpha_E3_glycop	PF01563	10	307	56 aa	60%		Alphavirus E3 glycoprotein
Alpha_GJ	PF03229	5	43	76 aa	65%		Alphavirus glycoprotein J
Alpha_kinase	PF02816	8	100	205 aa	27%	1ia9	Alpha-kinase family
Alpha_L_fucos	PF01120	3	151	314 aa	37%	1hl9	Alpha-L-fucosidase
Alpha_TIF	PF02232	8	42	341 aa	45%	16vp	Alpha trans-inducing protein (Alpha-TIF)
Alph_Pro_TM	PF09608	35	51	221 aa	34%		Putative transmembrane protein (Alph_Pro_TM)
Alum_res	PF06838	14	112	384 aa	52%		Aluminium resistance protein
AMA-1	PF02430	4	373	306 aa	69%	1hn6	Apical membrane antigen 1
Amastin	PF07344	3	58	155 aa	37%		Amastin surface glycoprotein
Amb_V_allergen	PF03913	2	4	43 aa	60%	1bbg	Amb V Allergen
Amelin	PF05111	4	18	370 aa	59%		Ameloblastin precursor (Amelin)
Amelogenin	PF02948	6	112	114 aa	66%		Amelogenin
AMH_N	PF04709	5	24	352 aa	37%		Anti-Mullerian hormone, N terminal region
Amidase	PF01425	44	2090	420 aa	26%	1ocm	Amidase
Amidase_2	PF01510	57	1001	151 aa	21%	1lba	N-acetylmuramoyl-L-alanine amidase
Amidase_3	PF01520	31	893	191 aa	29%	1jwq	N-acetylmuramoyl-L-alanine amidase
Amidase_5	PF05382	8	38	139 aa	43%		Bacteriophage peptidoglycan hydrolase
Amidinotransf	PF02274	27	431	332 aa	25%	1jdw	Amidinotransferase
Amidohydro_1	PF01979	58	4432	219 aa	17%	1j79	Amidohydrolase family
Amidohydro_2	PF04909	137	1181	286 aa	14%		Amidohydrolase
Amidohydro_3	PF07969	43	1073	344 aa	19%		Amidohydrolase family
Amido_AtzD_TrzD	PF09663	9	15	350 aa	54%		Amidohydrolase ring-opening protein (Amido_AtzD_TrzD)
Aminotran_1_2	PF00155	48	7734	314 aa	18%	1art	Aminotransferase class I and II
Aminotran_3	PF00202	18	3499	317 aa	29%	1dgd	Aminotransferase class-III
Aminotran_4	PF01063	25	1313	264 aa	26%	1daa	Aminotransferase class IV
Aminotran_5	PF00266	45	3509	309 aa	21%	1bjo	Aminotransferase class-V
Amino_oxidase	PF01593	86	2116	309 aa	18%	1b37	Flavin containing amine oxidoreductase
AmiS_UreI	PF02293	5	202	186 aa	77%		AmiS/UreI family transporter
AMMECR1	PF01871	6	186	176 aa	29%		AMMECR1
Ammonium_transp	PF00909	25	1230	371 aa	27%		Ammonium Transporter Family
AMO	PF02461	5	3178	149 aa	60%		Ammonia monooxygenase
AmoA	PF05145	8	155	292 aa	25%		Putative ammonia monooxygenase
AmoC	PF04896	4	28	250 aa	57%		Ammonia monooxygenase/methane monooxygenase, subunit C
AMOP	PF03782	6	40	151 aa	31%		AMOP domain
AMP-binding	PF00501	401	13267	335 aa	21%	1lci	AMP-binding enzyme
AMPKBI	PF04739	13	98	93 aa	42%		5'-AMP-activated protein kinase, beta subunit, complex-interacting region
AMP_N	PF05195	16	348	126 aa	29%	1az9	Aminopeptidase P, N-terminal domain
ANATO	PF01821	18	141	35 aa	40%	1c5a	Anaphylotoxin-like domain
Androgen_recep	PF02166	3	125	273 aa	68%		Androgen receptor
Anemone_cytotox	PF06369	3	27	111 aa	51%	1kd6	Sea anemone cytotoxic protein
AnfG_VnfG	PF03139	11	39	111 aa	45%		Vanadium/alternative nitrogenase delta subunit
AnfO_nitrog	PF09582	11	16	195 aa	30%		Iron only nitrogenase protein AnfO (AnfO_nitrog)
ANF_receptor	PF01094	120	2261	293 aa	15%	2liv	Receptor family ligand binding region
Ank	PF00023	1163	56928	30 aa	28%	1awc	Ankyrin repeat
ANKH	PF07260	2	13	443 aa	89%		Progressive ankylosis protein (ANKH)
Annexin	PF00191	180	1831	63 aa	30%	2ran	Annexin
ANP	PF00212	14	171	77 aa	42%	1anp	Atrial natriuretic peptide
Anp1	PF03452	7	64	342 aa	44%		Anp1
ANT	PF03374	4	101	128 aa	48%		Phage antirepressor protein
AntA	PF08346	28	105	67 aa	41%		AntA/AntB antirepressor
ANTAR	PF03861	18	406	56 aa	30%	1qo0	ANTAR domain
ANTH	PF07651	29	192	243 aa	24%		ANTH domain
Anthrax-tox_M	PF09156	2	2	287 aa	100%	1j7n	Anthrax toxin lethal factor, middle domain
Anthrax_toxA	PF03497	7	17	150 aa	43%	1jky	Anthrax toxin LF subunit
Anth_Ig	PF05587	3	30	98 aa	56%		Anthrax receptor extracellular domain
Anth_synt_I_N	PF04715	67	944	134 aa	24%	1i1q	Anthranilate synthase component I, N terminal region
Anti-silence	PF04729	6	93	147 aa	49%	1roc	Anti-silencing protein, ASF1-like
Antibiotic_NAT	PF02522	11	96	202 aa	36%		Aminoglycoside 3-N-acetyltransferase
Anticodon_1	PF08264	179	2178	135 aa	22%	1ivs	Anticodon-binding domain
Antig_Caf1	PF09255	2	8	132 aa	100%	1p5v	Caf1 Capsule antigen
Antimicrobial10	PF08105	2	2	52 aa	100%		Metchnikowin family
Antimicrobial11	PF08106	2	2	16 aa	88%		Formaecin family
Antimicrobial12	PF08107	4	29	38 aa	50%		Pleurocidin family
Antimicrobial13	PF08108	2	2	15 aa	100%		Halocidin family
Antimicrobial14	PF08109	2	2	31 aa	100%		Lactocin 705 family
Antimicrobial15	PF08110	2	3	19 aa	60%		Ocellatin family
Antimicrobial16	PF08128	3	6	42 aa	78%		Double glycine cleavage site bacteriolysin
Antimicrobial17	PF08129	2	6	41 aa	59%		Alpha/beta enterocin family
Antimicrobial18	PF08130	2	3	43 aa	62%		Type A lantibiotic family
Antimicrobial19	PF08225	4	4	23 aa	77%		Pseudin antimicrobial peptide
Antimicrobial20	PF08256	14	38	13 aa	58%		Aurein-like antibiotic peptide
Antimicrobial_1	PF08018	15	46	23 aa	58%		Frog antimicrobial peptide
Antimicrobial_2	PF08023	18	82	31 aa	36%		Frog antimicrobial peptide
Antimicrobial_3	PF08025	2	4	37 aa	84%		Spider antimicrobial peptide
Antimicrobial_4	PF08024	5	6	23 aa	53%		Ant antimicrobial peptide
Antimicrobial_5	PF08026	2	4	35 aa	78%		Bee antimicrobial peptide
Antimicrobial_6	PF08036	3	3	38 aa	65%		Diapausin family of antimicrobial peptide
Antimicrobial_7	PF08102	3	7	42 aa	76%		Scorpion antimicrobial peptide
Antimicrobial_8	PF08103	4	7	17 aa	59%		Uperin family
Antimicrobial_9	PF08104	2	2	24 aa	96%		Ponericin L family
Antirestrict	PF03230	6	95	97 aa	46%		Antirestriction protein
Antistasin	PF02822	11	113	26 aa	40%	1hia	Antistasin family
Antiterm	PF03589	4	61	92 aa	30%		Antitermination protein
Ant_C	PF05586	2	19	91 aa	69%		Anthrax receptor C-terminus region
An_peroxidase	PF03098	17	503	311 aa	25%	1mhl	Animal haem peroxidase
AOX	PF01786	10	181	241 aa	46%		Alternative oxidase
AP2	PF00847	235	1562	52 aa	38%	3gcc	AP2 domain
ApbA	PF02558	100	671	151 aa	23%	1ks9	Ketopantoate reductase PanE/ApbA
ApbA_C	PF08546	101	650	125 aa	25%	1ks9	Ketopantoate reductase PanE/ApbA C terminal
ApbE	PF02424	12	468	296 aa	26%		ApbE family
APC10	PF03256	7	80	179 aa	31%	1gqp	Anaphase-promoting complex, subunit 10 (APC10)
Apc13p	PF05839	3	13	87 aa	50%		Apc13p protein
Apc15p	PF05841	2	2	156 aa	32%		Apc15p protein
APC2	PF08672	14	41	59 aa	44%	1ldd	Anaphase promoting complex (APC) subunit 2
APC8	PF04049	4	54	144 aa	33%		Anaphase promoting complex subunit 8 / Cdc23
APC_15aa	PF05972	9	33	16 aa	49%	1jpp	APC 15 residue motif
APC_basic	PF05956	3	11	306 aa	55%		APC basic domain
APC_crr	PF05923	27	109	26 aa	40%		APC cysteine-rich region
APG12	PF04110	6	44	93 aa	35%		Ubiquitin-like autophagy protein Apg12
APG17	PF04108	2	17	175 aa	41%		Autophagy protein Apg17
APG5	PF04106	4	73	197 aa	35%		Autophagy protein Apg5
APG6	PF04111	5	96	317 aa	36%		Autophagy protein Apg6
APG9	PF04109	4	82	359 aa	36%		Autophagy protein Apg9
APH	PF01636	272	1904	236 aa	15%	1j7l	Phosphotransferase enzyme family
Aph-1	PF06105	6	36	231 aa	52%		Aph-1 protein
aPHC	PF05875	9	70	247 aa	27%		Alkaline phytoceramidase (aPHC)
APH_6_hur	PF04655	9	101	215 aa	39%		Aminoglycoside/hydroxyurea antibiotic resistance kinase
API5	PF05918	3	36	407 aa	35%		Apoptosis inhibitory protein 5 (API5)
Apidaecin	PF00807	2	26	27 aa	94%		Apidaecin
Apo-CII	PF05355	6	9	74 aa	64%	1by6	Apolipoprotein C-II
Apo-CIII	PF05778	5	10	84 aa	62%		Apolipoprotein CIII (Apo-CIII)
Apo-VLDL-II	PF05418	3	7	82 aa	78%		Apovitellenin I (Apo-VLDL-II)
ApoA-II	PF04711	4	10	76 aa	67%	1l6k	Apolipoprotein A-II (ApoA-II)
APOBEC_C	PF05240	16	229	62 aa	44%		APOBEC-like C-terminal domain
APOBEC_N	PF08210	22	239	110 aa	44%		APOBEC-like N-terminal domain
ApoC-I	PF04691	4	10	53 aa	66%	1ale	Apolipoprotein C-I (ApoC-1)
Apocytochr_F_C	PF01333	11	174	107 aa	68%	1ctm	Apocytochrome F, C-terminal
ApoL	PF05461	7	41	265 aa	37%		Apolipoprotein L
Apolipoprotein	PF01442	21	152	189 aa	24%	1oef	Apolipoprotein A1/A4/E domain
ApoLp-III	PF07464	5	12	160 aa	70%	1eq1	Apolipophorin-III precursor (apoLp-III)
APSES	PF02292	8	100	82 aa	42%	1bm8	APSES domain
APS_kinase	PF01583	20	527	155 aa	49%	1d6j	Adenylylsulphate kinase
APT	PF03440	5	36	91 aa	53%	1pre	Aerolysin/Pertussis toxin (APT) domain
Apyrase	PF06079	7	45	305 aa	44%	1s1d	Apyrase
AP_endonuc_2	PF01261	314	2096	202 aa	15%	1qtw	Xylose isomerase-like TIM barrel
AP_endonuc_2_N	PF07582	9	108	51 aa	37%		AP endonuclease family 2 C terminus
ArabFuran-catal	PF09206	4	23	308 aa	76%	1wd3	Alpha-L-arabinofuranosidase B, catalytic
Arabinose_Isome	PF02610	2	83	477 aa	55%		L-arabinose isomerase
Arabinose_trans	PF04602	7	88	718 aa	55%		Mycobacterial cell wall arabinan synthesis protein
AraC_binding	PF02311	59	747	126 aa	16%	2aac	AraC-like ligand binding domain
AraC_E_bind	PF06445	100	597	150 aa	16%	1d5y	Bacterial transcription activator, effector binding domain
AraC_N	PF06719	23	238	153 aa	32%		AraC-type transcriptional regulator N-terminus
Arb1	PF09692	9	12	359 aa	37%		Argonaute siRNA chaperone (ARC) complex subunit Arb1
Arc	PF03869	3	61	46 aa	39%	1myk	Arc-like DNA binding domain
ARC105	PF09606	5	17	63 aa	60%		ARC105 domain
Arch_ATPase	PF01637	32	218	186 aa	23%		Archaeal ATPase
Arch_flagellin	PF01917	19	83	211 aa	32%		Archaebacterial flagellin
Arch_fla_DE	PF04659	12	25	108 aa	37%		Archaeal flagella protein
Arc_PepC	PF06819	6	9	110 aa	33%		Archaeal Peptidase A24 C-terminal Domain
Arc_PepC_II	PF06847	10	22	84 aa	27%		Archaeal Peptidase A24 C-terminus Type II
Arc_trans_TRASH	PF08394	8	15	33 aa	45%		Archaeal TRASH domain
ARD	PF03079	11	160	147 aa	32%	1m4o	ARD/ARD' family
ArdA	PF07275	11	60	163 aa	30%		Antirestriction protein (ArdA)
AreA_N	PF07573	4	14	84 aa	60%		Nitrogen regulatory protein AreA N terminus
Arena_glycoprot	PF00798	7	214	300 aa	44%	1s7q	Arenavirus glycoprotein
Arena_nucleocap	PF00843	8	321	266 aa	57%		Arenavirus nucleocapsid protein
Arena_RNA_pol	PF06317	4	75	1039 aa	49%		Arenavirus RNA polymerase
Arf	PF00025	20	1049	167 aa	39%	1hur	ADP-ribosylation factor family
Arfaptin	PF06456	11	83	217 aa	32%	1i4l	Arfaptin-like domain
ArfGap	PF01412	23	624	119 aa	32%	1dcq	Putative GTPase activating protein for Arf
Arginase	PF00491	11	878	276 aa	27%	1rla	Arginase family
Arginosuc_synth	PF00764	12	594	377 aa	41%	1kp2	Arginosuccinate synthase
ArgJ	PF01960	15	403	387 aa	41%		ArgJ family
ArgK	PF03308	9	268	245 aa	41%		ArgK protein
Arg_repressor	PF01316	10	363	69 aa	34%	1aoy	Arginine repressor, DNA binding domain
Arg_repressor_C	PF02863	49	379	68 aa	32%	1aoy	Arginine repressor, C-terminal domain
Arg_tRNA_synt_N	PF03485	55	680	86 aa	28%	1f7u	Arginyl tRNA synthetase N terminal domain
ARID	PF01388	12	301	98 aa	29%	1bmy	ARID/BRIGHT DNA binding domain
Arif-1	PF06770	8	26	197 aa	29%		Actin-rearrangement-inducing factor (Arif-1)
Arm	PF00514	244	3701	41 aa	22%	3bct	Armadillo/beta-catenin-like repeat
ARM_1	PF04683	6	62	249 aa	41%		Adhesion regulating molecule conserved region
AroM	PF07302	4	23	221 aa	57%		AroM protein
ARPC4	PF05856	6	74	163 aa	61%		ARP2/3 complex 20 kDa subunit (ARPC4)
Arrestin_C	PF02752	61	352	141 aa	20%	1cf1	Arrestin (or S-antigen), C-terminal domain
Arrestin_N	PF00339	43	408	137 aa	22%	1cf1	Arrestin (or S-antigen), N-terminal domain
ARS2	PF04959	3	28	203 aa	62%		Arsenite-resistance protein 2
ArsA_ATPase	PF02374	11	478	288 aa	26%	1f48	Anion-transporting ATPase
ArsB	PF02040	4	212	389 aa	45%		Arsenical pump membrane protein
ArsC	PF03960	36	875	110 aa	27%	1i9d	ArsC family
ArsD	PF06953	3	65	118 aa	41%		Arsenical resistance operon trans-acting repressor ArsD
ART	PF01129	9	91	189 aa	37%	1gy0	NAD:arginine ADP-ribosyltransferase
Arteri_env	PF01606	3	134	210 aa	74%		Arterivirus envelope protein
Arteri_Gl	PF00951	8	4353	171 aa	73%		Arterivirus GL envelope glycoprotein
Arteri_GP4	PF02497	3	81	170 aa	78%		Arterivirus glycoprotein
Arteri_nucleo	PF01481	4	253	107 aa	66%	1p65	Arterivirus nucleocapsid protein
Arv1	PF04161	7	56	148 aa	33%		Arv1-like family
Arylesterase	PF01731	6	58	77 aa	41%		Arylesterase
Arylsulfotrans	PF05935	8	65	389 aa	37%		Arylsulfotransferase (ASST)
ASC	PF00858	28	332	345 aa	21%		Amiloride-sensitive sodium channel
ASCH	PF04266	89	281	102 aa	19%		ASCH domain
ASD1	PF08688	7	30	142 aa	44%		Apx/Shroom domain ASD1
ASD2	PF08687	9	48	252 aa	45%		Apx/Shroom domain ASD2
ASFV_360	PF01671	14	22	204 aa	42%		African swine fever virus multigene family 360 protein
ASFV_J13L	PF05568	2	9	184 aa	86%		African swine fever virus J13L protein
ASFV_L11L	PF05293	2	8	77 aa	90%		African swine fever virus (ASFV) L11L protein
ASFV_p27	PF06556	2	11	131 aa	97%		IAP-like protein p27 C-terminus
AsiA	PF09010	5	8	91 aa	45%		Anti-Sigma Factor A
ASL_C	PF08328	37	251	114 aa	58%		Adenylosuccinate lyase C-terminal
AsmA	PF05170	12	419	366 aa	17%		AsmA family
AsnA	PF03590	6	117	233 aa	53%	12as	Aspartate-ammonia ligase
AsnC_trans_reg	PF01037	264	2185	75 aa	23%	1i1g	AsnC family
Asn_synthase	PF00733	105	907	266 aa	26%	1ct9	Asparagine synthase
Asp	PF00026	23	1337	304 aa	27%	1mpp	Eukaryotic aspartyl protease
Asp-Al_Ex	PF06826	34	324	168 aa	27%		Predicted Permease Membrane Region
Asp-B-Hydro_N	PF05279	2	51	196 aa	64%		Aspartyl beta-hydroxylase N-terminal region
Asparaginase	PF00710	110	572	303 aa	29%	3pga	Asparaginase
Asparaginase_2	PF01112	7	375	246 aa	36%	1ayl	Asparaginase
Asparaginase_II	PF06089	11	100	321 aa	36%		L-asparaginase II
Asp_Arg_Hydrox	PF05118	12	185	159 aa	31%	1e5r	Aspartyl/Asparaginyl beta-hydroxylase
Asp_decarbox	PF02261	8	297	114 aa	50%	1aw8	Aspartate decarboxylase
Asp_Glu_race	PF01177	66	1193	209 aa	22%	1b74	Asp/Glu/Hydantoin racemase
Asp_protease	PF09668	12	77	120 aa	53%		Aspartyl protease
Asr	PF06392	8	82	20 aa	60%		Acid shock protein repeat
AstA	PF04958	6	158	337 aa	42%		Arginine N-succinyltransferase beta subunit
Astacin	PF01400	26	402	180 aa	35%	1ast	Astacin (Peptidase family M12A)
AstB	PF04996	4	100	432 aa	58%		Succinylarginine dihydrolase
AstE_AspA	PF04952	33	458	278 aa	19%		Succinylglutamate desuccinylase / Aspartoacylase family
Astro_capsid	PF03115	7	494	190 aa	60%		Astrovirus capsid protein precursor
ATE_C	PF04377	13	251	139 aa	35%		Arginine-tRNA-protein transferase, C terminus
ATE_N	PF04376	11	241	88 aa	34%		Arginine-tRNA-protein transferase, N terminus
ATG16	PF08614	17	57	161 aa	25%		Autophagy protein 16 (ATG16)
ATG27	PF09451	15	38	257 aa	19%		Autophagy-related protein 27
ATG_C	PF09333	22	67	96 aa	35%		ATG C terminal domain
ATHILA	PF03078	13	44	259 aa	32%		ATHILA ORF-1 family
ATLF	PF07737	3	8	222 aa	40%	1pwq	Anthrax toxin lethal factor, N- and C-terminal domain
ATP-cone	PF03477	73	1114	91 aa	24%	7r1r	ATP cone domain
ATP-grasp	PF02222	23	920	157 aa	30%	1scu	ATP-grasp domain
ATP-grasp_2	PF08442	22	862	160 aa	37%		ATP-grasp domain
ATP-grasp_3	PF02655	18	240	166 aa	19%		ATP-grasp domain
ATP-gua_Ptrans	PF00217	6	783	152 aa	50%	1crk	ATP:guanido phosphotransferase, C-terminal catalytic domain
ATP-gua_PtransN	PF02807	6	691	70 aa	65%	1crk	ATP:guanido phosphotransferase, N-terminal domain
ATP-sulfurylase	PF01747	19	267	303 aa	35%	1i2d	ATP-sulfurylase
ATP-synt	PF00231	18	830	272 aa	33%	1bmf	ATP synthase
ATP-synt_10	PF05176	3	25	143 aa	40%		ATP10 protein
ATP-synt_8	PF00895	66	3190	53 aa	40%		ATP synthase protein 8
ATP-synt_A	PF00119	30	6220	195 aa	43%	1c17	ATP synthase A chain
ATP-synt_ab	PF00006	152	7798	209 aa	47%	1bmf	ATP synthase alpha/beta family, nucleotide-binding domain
ATP-synt_ab_C	PF00306	151	5752	96 aa	43%	1bmf	ATP synthase alpha/beta chain, C terminal domain
ATP-synt_ab_N	PF02874	196	6055	64 aa	40%	1bmf	ATP synthase alpha/beta family, beta-barrel domain
ATP-synt_B	PF00430	27	913	130 aa	23%	1b9u	ATP synthase B/B' CF(0)
ATP-synt_C	PF00137	35	1738	66 aa	29%	1aty	ATP synthase subunit C
ATP-synt_D	PF01813	18	214	187 aa	33%		ATP synthase subunit D
ATP-synt_DE	PF00401	16	567	47 aa	36%	1aqt	ATP synthase, Delta/Epsilon chain, long alpha-helix domain
ATP-synt_DE_N	PF02823	20	923	81 aa	32%	1aqt	ATP synthase, Delta/Epsilon chain, beta-sandwich domain
ATP-synt_E	PF05680	18	46	75 aa	36%		ATP synthase E chain
ATP-synt_Eps	PF04627	9	56	48 aa	42%	1e79	Mitochondrial ATP synthase epsilon chain
ATP-synt_E_2	PF08112	2	4	43 aa	55%		ATP synthase epsilon subunit
ATP-synt_F	PF01990	14	151	94 aa	30%		ATP synthase (F/14-kDa) subunit
ATP-synt_F6	PF05511	4	30	88 aa	48%		Mitochondrial ATP synthase coupling factor 6
ATP-synt_G	PF04718	7	59	102 aa	32%		Mitochondrial ATP synthase g subunit
ATP-synt_J	PF04911	2	14	54 aa	46%		ATP synthase j chain
ATP-synt_S1	PF05827	4	45	286 aa	48%		Vacuolar ATP synthase subunit S1 (ATP6S1)
ATP11	PF06644	5	48	238 aa	29%		ATP11 protein
ATP12	PF07542	11	104	136 aa	32%		ATP12 chaperone protein
ATP1G1_PLM_MAT8	PF02038	8	54	52 aa	45%		ATP1G1/PLM/MAT8 family
ATPase_gene1	PF09527	30	42	60 aa	42%		Putative F0F1-ATPase subunit (ATPase_gene1)
ATP_bind_1	PF03029	32	337	215 aa	27%		Conserved hypothetical ATP binding protein
ATP_bind_2	PF03668	4	379	277 aa	41%		P-loop ATPase protein family
ATP_bind_3	PF01171	33	1157	146 aa	29%	1ni5	PP-loop family
ATP_bind_4	PF01902	6	166	209 aa	32%	1ru8	ATP-binding region
ATP_synt_H	PF05493	10	57	63 aa	44%		ATP synthase subunit H
ATP_synt_I	PF03899	5	100	119 aa	36%		ATP synthase I chain
Atracotoxin	PF05353	2	7	42 aa	65%	1qdp	Delta Atracotoxin
Atrophin-1	PF03154	3	41	461 aa	46%		Atrophin-1 family
ATS3	PF06232	5	23	124 aa	48%		Embryo-specific protein 3, (ATS3)
Attacin_C	PF03769	10	67	110 aa	36%		Attacin, C-terminal region
Attacin_N	PF03768	14	50	63 aa	41%		Attacin, N-terminal region
Attractin	PF08037	2	5	54 aa	65%		Attractin family
ATX_III	PF08098	2	5	17 aa	60%		Anemonia sulcata toxin III family
AT_hook	PF02178	43	1596	13 aa	47%	2eze	AT hook motif
Aurora-A_bind	PF09041	4	15	61 aa	57%		Aurora-A binding
Autoind_bind	PF03472	45	450	140 aa	23%	1h0m	Autoinducer binding domain
Autoind_synth	PF00765	13	258	171 aa	30%	1kzf	Autoinducer synthetase
Autophagy_C	PF03987	7	97	123 aa	36%		Autophagocytosis associated protein, C-terminal domain
Autophagy_N	PF03986	6	62	128 aa	42%		Autophagocytosis associated protein, N-terminal domain
Autotransporter	PF03797	216	1497	241 aa	15%	1uyn	Autotransporter beta-domain
Auto_anti-p27	PF06677	15	61	41 aa	38%		Sjogren's syndrome/scleroderma autoantigen 1 (Autoantigen p27)
Auxin_BP	PF02041	4	45	148 aa	70%	1lr5	Auxin binding protein
Auxin_inducible	PF02519	14	230	95 aa	33%		Auxin responsive protein
Auxin_repressed	PF05564	12	51	103 aa	40%		Dormancy/auxin associated protein
Auxin_resp	PF06507	17	134	80 aa	45%		Auxin response factor
AUX_IAA	PF02309	11	242	179 aa	36%		AUX/IAA family
Avian_gp85	PF03708	4	113	214 aa	62%		Avian retrovirus envelope protein, gp85
Avidin	PF01382	6	30	111 aa	34%	1slf	Avidin family
Avirulence	PF03377	8	150	441 aa	66%		Xanthomonas avirulence protein, Avr/PthA
AvrB_AvrC	PF05394	4	15	307 aa	49%	1nh1	Avirulence protein
AvrD	PF05655	2	22	266 aa	69%		Pseudomonas avirulence D protein (AvrD)
AvrPphF-ORF-2	PF09143	3	8	159 aa	48%	1s21	AvrPphF-ORF-2
AvrPtoB-E3_ubiq	PF09046	4	8	124 aa	82%		AvrPtoB E3 ubiquitin ligase
Av_adeno_fibre	PF06536	5	9	94 aa	47%		Avian adenovirus fibre
AWPM-19	PF05512	8	18	133 aa	52%		AWPM-19-like family
AXE1	PF05448	11	78	246 aa	34%	1l7a	Acetyl xylan esterase (AXE1)
AXH	PF08517	5	31	114 aa	43%		Ataxin-1 and HBP1 module (AXH)
Axin_b-cat_bind	PF08833	7	33	36 aa	61%		Axin beta-catenin binding domain
AzlC	PF03591	78	384	141 aa	27%		AzlC protein
AzlD	PF05437	64	331	97 aa	22%		Branched-chain amino acid transport protein (AzlD)
A_amylase_inhib	PF01356	6	11	65 aa	51%	1hoe	Alpha amylase inhibitor
A_deamin	PF02137	7	149	276 aa	33%		Adenosine-deaminase (editase) domain
A_deaminase	PF00962	17	647	332 aa	21%	1add	Adenosine/AMP deaminase
A_deaminase_N	PF08451	19	45	97 aa	29%		Adenosine/AMP deaminase N-terminal
A_thal_3526	PF09713	13	40	50 aa	48%		Plant protein 1589 of unknown function (A_thal_3526)

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